Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03425 ATGTCCGTCATCGACATTCTCTTCCGCGTCGATTCCATTTGTCACAAATATGACAAATACGACATCGACAAGCAGCGCGAGCAAAACGCCTATGGCGACGACGCCTTTGCTCGTCTCTATGCAGCCGTCGAATCCAGCATTCAGACGGCTCTCAACGTTCCCTTCTCTTCCCTTCCCTTTTCTTTTTCTTCTTCTTCTCTTTGCTTTTCTTCGAAATTCACCCTCTTTGCTTCAATGCAGAAATCGGAGGCTGCTTCCACGGAGTCCAACAGGGCTGTTTCTGCGGCTTTGAATGCGGAGGTTCGTCGGACCAAGGGCAGACTCATGGACGAGATTCCAAGACTGCGCAAATTGGTGAATAAGAAGGTTAAAGGTCTCACAAAAGAGGATATGGCCGTTCGTCAGGATCTTGTTCTGGCATTGCCCGAGAGAATCCAAGCAATACCTGATGGTATTTCTGGTGCTTCTATTCAAACTGCAGCATGGGGTGCTGACTCAACTCAGCCCTATGTCAAGTTTGACTCAGAAGGACAACTTGATGATGAATATTTCCAACAAAGTGAAGAATCCAGTCAGTTCCGACAAGAGTATGAAATGCGCAGGAAGAAACAGGATGAAGGACTTGATATCATATCGGAGGGATTGGATACCTTGAAGGATCTGGCCCAAGATATGAATGAGGAATTGGATCGGCAAGTTCCACTAATGGACGAAATTGACAAAAAGGTGGATAAGACAACAAACGAACTGAGGAACACTAACGTGAAGCTGAAGAAAACTCTCAACGATATAAGGTCTAGTCGAAACTTCATCATCGACATCATTCTACTCTGTGTTCTTCTTGGAATCGTTATGTATTTATACAATGCTCTGAGGTGA 879 0.4516 MSVIDILFRVDSICHKYDKYDIDKQREQNAYGDDAFARLYAAVESSIQTALNVPFSSLPFSFSSSSLCFSSKFTLFASMQKSEAASTESNRAVSAALNAEVRRTKGRLMDEIPRLRKLVNKKVKGLTKEDMAVRQDLVLALPERIQAIPDGISGASIQTAAWGADSTQPYVKFDSEGQLDDEYFQQSEESSQFRQEYEMRRKKQDEGLDIISEGLDTLKDLAQDMNEELDRQVPLMDEIDKKVDKTTNELRNTNVKLKKTLNDIRSSRNFIIDIILLCVLLGIVMYLYNALR 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03425 292 CDD SNARE_Qc 201 259 - -
Viun5g03425 292 SUPERFAMILY SNARE fusion complex 191 259 - -
Viun5g03425 292 Gene3D - 197 259 - -
Viun5g03425 292 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 198 260 IPR000727 -
Viun5g03425 292 Pfam SNARE domain 235 284 IPR000727 -
Viun5g03425 292 SMART tSNARE_6 193 260 IPR000727 -
Viun5g03425 292 PANTHER SYNTAXIN 90 280 IPR045242 -
Viun5g03425 292 Coils Coil 236 263 - -
Viun5g03425 292 FunFam Syntaxin 6 205 268 - -
Viun5g03425 292 ProSitePatterns Syntaxin / epimorphin family signature. 204 243 IPR006012 GO:0005484|GO:0006886|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03425 Viun-Chr5 44386382 44389273 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g03425 1 292 SNARE and Associated Proteins AT3G09740 59.864 1.50e-127 362
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03425 K08506 - gmx:100777251 421.394
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g03425 5 44386382 44389273 Viun5g03425 5 44386382 44389273 ECH