Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03424 ATGTCCGTCATCGACATTCTCTTCCGCGTCGATTCCATTTGTCACAAATATGACAAATACGACATCGACAAGCAGCGCGAGCAAAACGCCTATGGCGACGACGCCTTTGCTCGTCTCTATGCAGCCGTCGAATCCAGCATTCAGACGGCTCTCAACAAATCGGAGGCTGCTTCCACGGAGTCCAACAGGGCTGTTTCTGCGGCTTTGAATGCGGAGGTTCGTCGGACCAAGGGCAGACTCATGGACGAGATTCCAAGACTGCGCAAATTGGTGAATAAGAAGGTTAAAGGTCTCACAAAAGAGGATATGGCCGTTCGTCAGGATCTTGTTCTGGCATTGCCCGAGAGAATCCAAGCAATACCTGATGGTATTTCTGGTGCTTCTATTCAAACTGCAGCATGGGGTGCTGACTCAACTCAGCCCTATGTCAAGTTTGACTCAGAAGGACAACTTGATGATGAATATTTCCAACAAAGTGAAGAATCCAGTCAGTTCCGACAAGAGTATGAAATGCGCAGGAAGAAACAGGATGAAGGACTTGATATCATATCGGAGGGATTGGATACCTTGAAGGATCTGGCCCAAGATATGAATGAGGAATTGGATCGGCAAGTTCCACTAATGGACGAAATTGACAAAAAGGTGGATAAGACAACAAACGAACTGAGGAACACTAACGTGAAGCTGAAGAAAACTCTCAACGATATAAGGTCTAGTCGAAACTTCATCATCGACATCATTCTACTCTGTGTTCTTCTTGGAATCGTTATGTATTTATACAATGCTCTGAGGTGA 795 0.4566 MSVIDILFRVDSICHKYDKYDIDKQREQNAYGDDAFARLYAAVESSIQTALNKSEAASTESNRAVSAALNAEVRRTKGRLMDEIPRLRKLVNKKVKGLTKEDMAVRQDLVLALPERIQAIPDGISGASIQTAAWGADSTQPYVKFDSEGQLDDEYFQQSEESSQFRQEYEMRRKKQDEGLDIISEGLDTLKDLAQDMNEELDRQVPLMDEIDKKVDKTTNELRNTNVKLKKTLNDIRSSRNFIIDIILLCVLLGIVMYLYNALR 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03424 264 CDD SNARE_Qc 173 231 - -
Viun5g03424 264 Gene3D - 169 231 - -
Viun5g03424 264 FunFam Syntaxin 6 177 240 - -
Viun5g03424 264 Pfam SNARE domain 207 256 IPR000727 -
Viun5g03424 264 SUPERFAMILY SNARE fusion complex 163 231 - -
Viun5g03424 264 Coils Coil 208 235 - -
Viun5g03424 264 PANTHER SYNTAXIN 56 252 IPR045242 -
Viun5g03424 264 ProSitePatterns Syntaxin / epimorphin family signature. 176 215 IPR006012 GO:0005484|GO:0006886|GO:0016020
Viun5g03424 264 SMART tSNARE_6 165 232 IPR000727 -
Viun5g03424 264 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 170 232 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03424 Viun-Chr5 44386382 44389273 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g03424 1 264 SNARE and Associated Proteins AT3G09740 66.165 1.74e-133 376
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03424 K08506 - gmx:100777251 436.417