Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03423 ATGGAGGGAGATCAACTGGGTTCTGGTTACTCTTTTCCACCAGGCTTCAGATTCCACCCTTCTGATGAAGAACTCATAGTTCATTACTTGCAGAACAAAATCTGTTCACGTCCTCTTCCAGCATCTATTATAGCTGAGATAGATCTCTACAAGTATAACCCGTGGGAGCTACCCAATAAGTCTTTGTTTGGAGAAGAAGAGTGGTACTTCTTTAGTCCAAGAGACAGAAAGTACCCTAATGGATTGAGGCCAAACAGGGCAGCAGCATCAGGATACTGGAAGGCAACAGGAACTGACAAGCCAATTCTTTCTTCTAGTGGATCAAAGCGCATAGGAGTGAAGAAAGCTCTGGTGTTTTATTCAGGTCGACCTCCTAAGGGATCTAAGACGGATTGGATCATGAATGAGTATAGATTGATTGATACAATCACCAAATCCTCCAGGCTAAAAGGCTCCATGCGGCTGGATGACTGGGTACTTTGCCGGGTTCGACATAAAGGCTACTCTTCGAAGATATCAGGTGAAAATCAAGAGAATCCTAGTGAACTAAATCTGTCTGCAAAACTACCTAGGAGTGAAGAATATCCAACAAACATGAACTGTCGGGCTGACATGATCACTGATTATCAATACAAAGACTATCAGATCATAGCCTCTATTCTTGTTGGTGCACCTGTATCTCCCACTGAAAACATGCCAAATATGAGCTTTAAGGGCTGCAAAGGCACCAATCTAGTTTCAGTTTTTGAAGATGGTTTCACTAAAGTGAACTCTCAAACGACATTTCCTTCTTTCGACAGTTACTTCAACCCACTGACAAGAAAATCCAATGAAGATGAACCGTATGGAAATCTCATCTCTTTTAACAGGAAGTTCAACGCTGAGGACAAAATGGACGAATCACCTAGCAGTAGAGAATTGAACTGCTATAACCAAAACCAGCCTGAAGATGACATTTTCAGTGGTAACCCACCAGACAATGGCATCAATTTTCAAGAGCTTAACGATTTAGTCTTTACAGGAAGGTACCCTCAGTGA 1038 0.421 MEGDQLGSGYSFPPGFRFHPSDEELIVHYLQNKICSRPLPASIIAEIDLYKYNPWELPNKSLFGEEEWYFFSPRDRKYPNGLRPNRAAASGYWKATGTDKPILSSSGSKRIGVKKALVFYSGRPPKGSKTDWIMNEYRLIDTITKSSRLKGSMRLDDWVLCRVRHKGYSSKISGENQENPSELNLSAKLPRSEEYPTNMNCRADMITDYQYKDYQIIASILVGAPVSPTENMPNMSFKGCKGTNLVSVFEDGFTKVNSQTTFPSFDSYFNPLTRKSNEDEPYGNLISFNRKFNAEDKMDESPSSRELNCYNQNQPEDDIFSGNPPDNGINFQELNDLVFTGRYPQ 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03423 345 ProSiteProfiles NAC domain profile. 12 166 IPR003441 GO:0003677|GO:0006355
Viun5g03423 345 SUPERFAMILY NAC domain 9 166 IPR036093 GO:0003677|GO:0006355
Viun5g03423 345 Gene3D NAC domain 21 169 IPR036093 GO:0003677|GO:0006355
Viun5g03423 345 FunFam NAC domain-containing protein 72-like 21 171 - -
Viun5g03423 345 Pfam No apical meristem (NAM) protein 13 139 IPR003441 GO:0003677|GO:0006355
Viun5g03423 345 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 12 258 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03423 Viun-Chr5 44383357 44385959 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g03423 5 177 NAC Transcription Factor Family AT1G69490 65.318 8.33e-82 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Viun5g03423 NAM 4.2e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03423 - - vra:106759457 681.019