Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03422 ATGATGTCTGGTGAAGCAATAACAACTGTCCCTTCCAACCTCAGAGATTCCTCGGTTCAAGTTCAAGTTCACCACCCAAACTCAAACCCTAATCTTAACCCTAATCCAAACTCATCATCAGCTAAGAGAAAAAGAAGCCTACCCGGAACACCAGATCCGAATGCAGAAGTGATTGCTCTGTCGCCAAAGTCGCTGATGGCGACGAACCGGTTCATATGCGAAGTGTGCAACAAGGGTTTCCAGAGAGACCAGAACCTGCAGCTGCATCGGCGAGGGCACAATCTGCCGTGGAAGCTGCGGCAAAGATCGAAGGAAGAGGTGGTGAGGAAGAAGGTGTACGTGTGTCCAGAGAAGAGTTGCGTGCACCATGACCCTTGCAGAGCCTTGGGAGACCTCACTGGGATAAAGAAACACTTCAGCAGAAAGCACGGTGAGAAGAAGTGGAAGTGCGAAAAGTGCTCCAAGAAATACGCTGTTCAATCTGACTGGAAAGCCCATAACAAGATTTGTGGGACTAGACAGTACAAATGTGACTGTGGCACAATATTCTCCAGGAAGGACAGCTTTGTAACGCATAGAGCTTTCTGTGACGCTATGGTGGAACAAAGTGGGAGACTTCCGGCAATTTTATCAAACCTCGGAAACGATATTTTGATGAACGCGCAAGGCCCGAGACTAATGCCTCAGGGTCTACAATTACACGGGTTTCATTCAGAGTTTGGTGGGCCAGGTTCAGAATCATACATGGGGAATTTTGGTGACGCCGCGGAACATGTTGAACATAAGCTAAGATTACCGATATGGCTAGACCAGACAAATCTTCAACTGAACCATCCTCTTGGCCTTGTTCCCGGCAATTCAAGTGTATTCTCACCTGGAACAACGTTGCCGGAAACAAACAACATGTTCGGGACAGCGTCGTCACAGGCACAGTGGACAAATTACCGATACCCAGAAGCATCTTTTACAAGTGCCAGTGTTTCTGTGCCTCATCATGGACTAAAGCTAGAGCAAGAAGAAAACAAAGGGGAGTTGTCGCATAGCGTGAGCTCTTTGTACCCATGTCACATGGAATCTACTAGGATGAGTGGTAATGGTAATGGTAATGATAATTTACCCTTCGACAGCTCTAGCTTTGGCTTGTTAGACCCGAACATGACGTCAAGCAACAATGTGGTAGAAATTCAGAAGATTTTCAAGCAAGGAAACGAGTCTGAAAACTTCAACCTGATGGTGAATTCCCAGGCAAGCAGCAACATGGGAAGTGGGTTTTCCTTGAGTTGCAGGAAGAGTTTGGAGCATATGGTGATGCCGAGGATCGAAGAGTGGGAAAGTGGAGAAGCAGAAATAATGGAGAAGCAAGTAGATTCAAGTTCAAAGACCGAAACGAAAGATTTCATGGGTGTGGGAGATGGGTCAGTGATGAAGGTGCAAAGGCAGTTCCGTGGACACTACTGA 1458 0.4698 MMSGEAITTVPSNLRDSSVQVQVHHPNSNPNLNPNPNSSSAKRKRSLPGTPDPNAEVIALSPKSLMATNRFICEVCNKGFQRDQNLQLHRRGHNLPWKLRQRSKEEVVRKKVYVCPEKSCVHHDPCRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHNKICGTRQYKCDCGTIFSRKDSFVTHRAFCDAMVEQSGRLPAILSNLGNDILMNAQGPRLMPQGLQLHGFHSEFGGPGSESYMGNFGDAAEHVEHKLRLPIWLDQTNLQLNHPLGLVPGNSSVFSPGTTLPETNNMFGTASSQAQWTNYRYPEASFTSASVSVPHHGLKLEQEENKGELSHSVSSLYPCHMESTRMSGNGNGNDNLPFDSSSFGLLDPNMTSSNNVVEIQKIFKQGNESENFNLMVNSQASSNMGSGFSLSCRKSLEHMVMPRIEEWESGEAEIMEKQVDSSSKTETKDFMGVGDGSVMKVQRQFRGHY 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03422 485 Gene3D Classic Zinc Finger 126 204 - -
Viun5g03422 485 SUPERFAMILY beta-beta-alpha zinc fingers 70 168 IPR036236 -
Viun5g03422 485 Gene3D Classic Zinc Finger 49 123 - -
Viun5g03422 485 FunFam protein indeterminate-domain 5, chloroplastic-like 126 205 - -
Viun5g03422 485 FunFam protein indeterminate-domain 12-like 50 119 - -
Viun5g03422 485 MobiDBLite consensus disorder prediction 1 53 - -
Viun5g03422 485 ProSitePatterns Zinc finger C2H2 type domain signature. 73 93 IPR013087 -
Viun5g03422 485 ProSiteProfiles Zinc finger C2H2 type domain profile. 71 93 IPR013087 -
Viun5g03422 485 ProSiteProfiles IQ motif profile. 471 485 IPR000048 GO:0005515
Viun5g03422 485 MobiDBLite consensus disorder prediction 1 45 - -
Viun5g03422 485 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 28 473 IPR031140 -
Viun5g03422 485 Pfam Zinc-finger double-stranded RNA-binding 71 93 IPR022755 -
Viun5g03422 485 SMART c2h2final6 148 168 IPR013087 -
Viun5g03422 485 SMART c2h2final6 113 143 IPR013087 -
Viun5g03422 485 SMART c2h2final6 71 93 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03422 Viun-Chr5 44371842 44374407 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g03422 38 212 IDZ Gene Family AT5G03150 80.000 1.11e-107 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Viun5g03422 zf-C2H2_jaz 8.2e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03422 K25870 - gmx:100811687 728.783
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g03422 5 44371842 44374407 Viun5g03422 5 44371842 44374407 ECH
Viun5g03422 5 44371842 44374407 Viun11g01981 11 35465696 35468900 PCT