Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03421 ATGATGTCTGGTGAAGCAATAACAACTGTCCCTTCCAACCTCAGAGATTCCTCGGTTCAAGTTCAAGTTCACCACCCAAACTCAAACCCTAATCTTAACCCTAATCCAAACTCATCATCAGCTAAGAGAAAAAGAAGCCTACCCGGAACACCAGCAGATCCGAATGCAGAAGTGATTGCTCTGTCGCCAAAGTCGCTGATGGCGACGAACCGGTTCATATGCGAAGTGTGCAACAAGGGTTTCCAGAGAGACCAGAACCTGCAGCTGCATCGGCGAGGGCACAATCTGCCGTGGAAGCTGCGGCAAAGATCGAAGGAAGAGGTGGTGAGGAAGAAGGTGTACGTGTGTCCAGAGAAGAGTTGCGTGCACCATGACCCTTGCAGAGCCTTGGGAGACCTCACTGGGATAAAGAAACACTTCAGCAGAAAGCACGGTGAGAAGAAGTGGAAGTGCGAAAAGTGCTCCAAGAAATACGCTGTTCAATCTGACTGGAAAGCCCATAACAAGATTTGTGGGACTAGACAGTACAAATGTGACTGTGGCACAATATTCTCCAGGAAGGACAGCTTTGTAACGCATAGAGCTTTCTGTGACGCTATGGTGGAACAAAGTGGGAGACTTCCGGCAATTTTATCAAACCTCGGAAACGATATTTTGATGAACGCGCAAGGCCCGAGACTAATGCCTCAGGGTCTACAATTACACGGGTTTCATTCAGAGTTTGGTGGGCCAGGTTCAGAATCATACATGGGGAATTTTGGTGACGCCGCGGAACATGTTGAACATAAGCTAAGATTACCGATATGGCTAGACCAGACAAATCTTCAACTGAACCATCCTCTTGGCCTTGTTCCCGGCAATTCAAGTGTATTCTCACCTGGAACAACGTTGCCGGAAACAAACAACATGTTCGGGACAGCGTCGTCACAGGCACAGTGGACAAATTACCGATACCCAGAAGCATCTTTTACAAGTGCCAGTGTTTCTGTGCCTCATCATGGACTAAAGCTAGAGCAAGAAGAAAACAAAGGGGAGTTGTCGCATAGCGTGAGCTCTTTGTACCCATGTCACATGGAATCTACTAGGATGAGTGGTAATGGTAATGGTAATGATAATTTACCCTTCGACAGCTCTAGCTTTGGCTTGTTAGACCCGAACATGACGTCAAGCAACAATGTGGTAGAAATTCAGAAGATTTTCAAGCAAGGAAACGAGTCTGAAAACTTCAACCTGATGGTGAATTCCCAGGCAAGCAGCAACATGGGAAGTGGGTTTTCCTTGAGTTGCAGGAAGAGTTTGGAGCATATGGTGATGCCGAGGATCGAAGAGTGGGAAAGTGGAGAAGCAGAAATAATGGAGAAGCAAGTAGATTCAAGTTCAAAGACCGAAACGAAAGATTTCATGGGTGTGGGAGATGGGTCAGTGATGAAGGTGCAAAGGCAGTTCCGTGGACACTACTGA 1461 0.4702 MMSGEAITTVPSNLRDSSVQVQVHHPNSNPNLNPNPNSSSAKRKRSLPGTPADPNAEVIALSPKSLMATNRFICEVCNKGFQRDQNLQLHRRGHNLPWKLRQRSKEEVVRKKVYVCPEKSCVHHDPCRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHNKICGTRQYKCDCGTIFSRKDSFVTHRAFCDAMVEQSGRLPAILSNLGNDILMNAQGPRLMPQGLQLHGFHSEFGGPGSESYMGNFGDAAEHVEHKLRLPIWLDQTNLQLNHPLGLVPGNSSVFSPGTTLPETNNMFGTASSQAQWTNYRYPEASFTSASVSVPHHGLKLEQEENKGELSHSVSSLYPCHMESTRMSGNGNGNDNLPFDSSSFGLLDPNMTSSNNVVEIQKIFKQGNESENFNLMVNSQASSNMGSGFSLSCRKSLEHMVMPRIEEWESGEAEIMEKQVDSSSKTETKDFMGVGDGSVMKVQRQFRGHY 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03421 486 ProSiteProfiles Zinc finger C2H2 type domain profile. 72 94 IPR013087 -
Viun5g03421 486 ProSitePatterns Zinc finger C2H2 type domain signature. 74 94 IPR013087 -
Viun5g03421 486 Gene3D Classic Zinc Finger 52 124 - -
Viun5g03421 486 FunFam protein indeterminate-domain 12-like 51 120 - -
Viun5g03421 486 SUPERFAMILY beta-beta-alpha zinc fingers 71 169 IPR036236 -
Viun5g03421 486 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 28 474 IPR031140 -
Viun5g03421 486 Pfam Zinc-finger double-stranded RNA-binding 72 94 IPR022755 -
Viun5g03421 486 SMART c2h2final6 114 144 IPR013087 -
Viun5g03421 486 SMART c2h2final6 149 169 IPR013087 -
Viun5g03421 486 SMART c2h2final6 72 94 IPR013087 -
Viun5g03421 486 MobiDBLite consensus disorder prediction 1 45 - -
Viun5g03421 486 Gene3D Classic Zinc Finger 127 205 - -
Viun5g03421 486 MobiDBLite consensus disorder prediction 1 55 - -
Viun5g03421 486 FunFam protein indeterminate-domain 5, chloroplastic-like 127 206 - -
Viun5g03421 486 ProSiteProfiles IQ motif profile. 472 486 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03421 Viun-Chr5 44371842 44374408 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g03421 38 213 IDZ Gene Family AT5G03150 79.545 5.90e-106 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Viun5g03421 zf-C2H2_jaz 8.2e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03421 K25870 - gmx:100811687 724.161