Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03413 ATGGGAGATTATAAGAGATTTTCATTTTCCAAAATGATTGGCTGCTGTGGTTGCTTCGGATTTGTGAAAAAACCTAGACGGCGTCGGGCTAAGCGTAGCATCAGCAATTTCCTCTCCCATGGCCTATTATATGATGTAGAAACTGAAGGTGATGAGTCGTTTAGTGGTGATGTTACTAGTAACGCCACCAGTGGAGATGATAATGAGGCGCATGTTGTTCGGAACCGTTCCGAGGATATTTTGAACTTTAGAGCTGAGAATGGCATGGTTTGTAGGCCATTTCCTGTCAAGGAGACTATTGAACTTGTTCGCTCAGAGGATGAATATGGGAACAAGATGATAAATGAATACATCCGAGAGTACAAAATTGGTTCTGGAAGCTATGCCAAAGTGGCTCTTTATAGAAGTTCCTTAGACGGAAATCACTATGCAATTAAGGTACTGATTATGAAAATGGTGGAACATCCTAATATAGTCAATCTCATTGAAGTTATTGATGACCCAGAGTCAGACGACTTCTACATGGTACTTGAATATGTGGAAAGCAAATGGGTGTGTGAGGGTACAGGTCGTCCTTGTGCATTAGGTGAAGAGACTGCTAGGAAATACTTGCGTGATATAGTCTCAGGATTAAGATATCTCCATGCTCACAATATAGTGCATGGGGATATAAAACCTGATAATCTGTTGATTACTCGTCATGGCACAGTAAAGATAGTGGATTTCAGTGTCAGCCAGGCTTTTGAGGATGGAAATGATGAACTTCGTCGATCACCTGGCACTCCTGTTTTCACTGCACCAGAATGTTGTTTAGGTCTTACTTATCATGGTAAAGCTTCTGACACTTGGGCCGTAGGAGTTACTTTGTACTGTATGATATTGGGTGAATACCCATTTCTTGGAGATACACTTCAAGATACATATGACAAAATAGTCAATGATCCTTTAGTTCTGCCAGATGACATTAATCCCCAGTTAAAGAACTTAATAGAAGGATTACTGTGCAAAGACCCAGAAAAAAGGATGACATTGGGCGATGTTGCCGAGCATGTCTGGGTTATTGGAAATGATGGCCCACTCCCTGGGTACTTATGTTGGTGCAAACGCAAGAGCCTGATGGCTGCAGATTTTGATGAAAGCAATATACCCTTGCTTGATCCACAATGA 1167 0.4147 MGDYKRFSFSKMIGCCGCFGFVKKPRRRRAKRSISNFLSHGLLYDVETEGDESFSGDVTSNATSGDDNEAHVVRNRSEDILNFRAENGMVCRPFPVKETIELVRSEDEYGNKMINEYIREYKIGSGSYAKVALYRSSLDGNHYAIKVLIMKMVEHPNIVNLIEVIDDPESDDFYMVLEYVESKWVCEGTGRPCALGEETARKYLRDIVSGLRYLHAHNIVHGDIKPDNLLITRHGTVKIVDFSVSQAFEDGNDELRRSPGTPVFTAPECCLGLTYHGKASDTWAVGVTLYCMILGEYPFLGDTLQDTYDKIVNDPLVLPDDINPQLKNLIEGLLCKDPEKRMTLGDVAEHVWVIGNDGPLPGYLCWCKRKSLMAADFDESNIPLLDPQ 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03413 388 SUPERFAMILY Protein kinase-like (PK-like) 113 361 IPR011009 -
Viun5g03413 388 SMART serkin_6 117 353 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g03413 388 Gene3D Transferase(Phosphotransferase) domain 1 107 362 - -
Viun5g03413 388 PANTHER MAP/MICROTUBULE AFFINITY-REGULATING KINASE 71 356 - -
Viun5g03413 388 FunFam Serine/threonine-protein kinase GRIK1 isoform A 191 360 - -
Viun5g03413 388 ProSitePatterns Protein kinases ATP-binding region signature. 123 151 IPR017441 GO:0005524
Viun5g03413 388 ProSitePatterns Serine/Threonine protein kinases active-site signature. 219 231 IPR008271 GO:0004672|GO:0006468
Viun5g03413 388 ProSiteProfiles Protein kinase domain profile. 117 353 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g03413 388 Pfam Protein kinase domain 119 353 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g03413 388 CDD STKc_LKB1_CaMKK 123 353 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03413 Viun-Chr5 44333815 44339563 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g03413 123 360 CBL-interacting serine-threonine protein kinases AT5G35410 32.296 5.87e-39 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-LKB Viun5g03413 Pkinase 5.7e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03413 K00908 - gmx:100776013 704.901