Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03408 ATGAGTGCTCAGCAAAAAGAAACGGAAAATCATCACACGCTTTCGTCCAATCCAACGGTGGATGATACAATGGGGGTAACCGGTGAAACCTCGCATGTAAACAATGAGTGGAAGCGAGACAAAATTCAGTTGGAAATACCGACCACAACATCGGAAGACTGTTGTCGGGATTTTGTTGGAATAAGGATGCCGCTCACGCCAAGTCCAACTCCTAGTCAGAAGAAAGTGAATTTTCTTGTGACTTCTCGCTCTGTCGATGCTCCTAGACCTTCTTCTTCTTCGGCTTCCAGAGGCAAATCATCCATGAGAAACATCTTGCCCAGGTTTGGCTTCAAGAATCGTCAATCGCTTGATGTTGAAAAGGCTGTTACCGCAGCTTCAGAAGCTTCTTTTTCCGGCCATCAAGAAAAGTCCTCCATCGCTAGATCAGTGTCTCTCACCAAGATATTCACTCCTAAGATTAATAGAACGTCTTCGTTACCGGTAGAAGAAATTGGGCGTGCAAACGTAGAATCTGCTCTGGTTGGAACTCTTGGTGCTTCTCCATACGAAAGAGAGACGCAGGGGATGATAGCTCGTTCTCGTTCAGTGCCTGTCAATGGCAAAGAAAAAGGCGTAAGGAGAATGGATTCAGTTTTCCGCATCATTCCTTCCACTCCTCGCGTACACGAAGTGAATGAATCAACAAAAGATTCTGACAATGGTGGTGGTGAAGATATTGGTCAAGAGGAAGCGGTGTGCAGAATTTGTCTGGTTGATCTATGTGAAGGAGGTGAGACATTAAAGATGGAATGCAGCTGCAAAGGTGAACTGGCTCTGGCTCACCAAGAATGTGCTGTTAAATGGTTTAGTATCAAGGGTAACAAGACCTGTGATGTGTGCAAGGAGGAAGTTCGGAACCTCCCTGTCACTCTCTTACGGATCCGAAGTGTTCAAACCCAGAACACTGGAGCAAGGTCCGAACAGGGAGATGATTACAGGGTTTGGCAGGAACTCCCGGTGCTTGTTATTGTCAGCATGCTTGCCTATTTCTGTTTCCTTGAGCAGCTGCTGGTTGGAAAAATGGGAACCAGGGCAATTTTTGTCTCTCTTCCATTTTCATGCGTATTAGGCCTACTCTCCTCCGTGACATCAACGACCATGGTGAAGAGCAAGTTCATCTGGTTATATGCATCTGTCCAATTTCTTTCGGTGGTCCTATTCGCCCATATATTTTACCCCTTGGTTGGTAAGCATGCGGTTTTGTCGATCCTTCTTGCTACATTTGCGGGGTTTGGTGTTGTGATGAGTGGAAGTTCAATTGTTTTGGAGATTTCTCGATGGAGAAGAAGATGGCTAACTTTATCACAGCAGCAACGTGGTTCTTCGTCGATGATACAAGAAGGGCTATGA 1392 0.4576 MSAQQKETENHHTLSSNPTVDDTMGVTGETSHVNNEWKRDKIQLEIPTTTSEDCCRDFVGIRMPLTPSPTPSQKKVNFLVTSRSVDAPRPSSSSASRGKSSMRNILPRFGFKNRQSLDVEKAVTAASEASFSGHQEKSSIARSVSLTKIFTPKINRTSSLPVEEIGRANVESALVGTLGASPYERETQGMIARSRSVPVNGKEKGVRRMDSVFRIIPSTPRVHEVNESTKDSDNGGGEDIGQEEAVCRICLVDLCEGGETLKMECSCKGELALAHQECAVKWFSIKGNKTCDVCKEEVRNLPVTLLRIRSVQTQNTGARSEQGDDYRVWQELPVLVIVSMLAYFCFLEQLLVGKMGTRAIFVSLPFSCVLGLLSSVTSTTMVKSKFIWLYASVQFLSVVLFAHIFYPLVGKHAVLSILLATFAGFGVVMSGSSIVLEISRWRRRWLTLSQQQRGSSSMIQEGL 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03408 463 ProSiteProfiles Zinc finger RING-CH-type profile. 239 301 IPR011016 GO:0008270
Viun5g03408 463 Pfam RING-variant domain 247 294 IPR011016 GO:0008270
Viun5g03408 463 CDD RING_CH-C4HC3_MARCH 247 295 - -
Viun5g03408 463 PANTHER OS02G0165000 PROTEIN 7 457 - -
Viun5g03408 463 MobiDBLite consensus disorder prediction 1 38 - -
Viun5g03408 463 SUPERFAMILY RING/U-box 243 298 - -
Viun5g03408 463 MobiDBLite consensus disorder prediction 1 32 - -
Viun5g03408 463 SMART ringv_2 246 295 IPR011016 GO:0008270
Viun5g03408 463 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 235 302 IPR013083 -
Viun5g03408 463 MobiDBLite consensus disorder prediction 82 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03408 Viun-Chr5 44285478 44288347 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g03408 244 301 C3H Transcription Factor Family AT2G37950 47.458 4.43e-13 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03408 - - gmx:100782610 679.093
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g03408 5 44285478 44288347 Viun5g03408 5 44285478 44288347 ECH
Viun5g03408 5 44285478 44288347 Viun11g01952 11 35259091 35269266 PCT