Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03407 ATGAGTGCTCAGCAAAAAGAAACGGAAAATCATCACACGCTTTCGTCCAATCCAACGGTGGATGATACAATGGGGGTAACCGGTGAAACCTCGCATGTAAACAATGAGTGGAAGCGAGACAAAATTCAGTTGGAAATACCGACCACAACATCGGAAGACTGTTGTCGGGATTTTGTTGGAATAAGGATGCCGCTCACGCCAAGTCCAACTCCTAGTCAGAAGAAAGTGAATTTTCTTGTGACTTCTCGCTCTGTCGATGCTCCTAGACCTTCTTCTTCTTCGGCTTCCAGAGGCAAATCATCCATGAGAAACATCTTGCCCAGGTTTGGCTTCAAGAATCGTCAATCGCTTGATGTTGAAAAGGCTGTTACCGCAGCTTCAGAAGCTTCTTTTTCCGGCCATCAAGAAAAGTCCTCCATCGCTAGATCAGTGTCTCTCACCAAGATATTCACTCCTAAGATTAATAGAACGTCTTCGTTACCGGTAGAAGAAATTGGGCGTGCAAACGTAGAATCTGCTCTGGTTGGAACTCTTGGTGCTTCTCCATACCAGGAAAGAGAGACGCAGGGGATGATAGCTCGTTCTCGTTCAGTGCCTGTCAATGGCAAAGAAAAAGGCGTAAGGAGAATGGATTCAGTTTTCCGCATCATTCCTTCCACTCCTCGCGTACACGAAGTGAATGAATCAACAAAAGATTCTGACAATGGTGGTGGTGAAGATATTGGTCAAGAGGAAGCGGTGTGCAGAATTTGTCTGGTTGATCTATGTGAAGGAGGTGAGACATTAAAGATGGAATGCAGCTGCAAAGGTGAACTGGCTCTGGCTCACCAAGAATGTGCTGTTAAATGGTTTAGTATCAAGGGTAACAAGACCTGTGATGTGTGCAAGGAGGAAGTTCGGAACCTCCCTGTCACTCTCTTACGGATCCGAAGTGTTCAAACCCAGAACACTGGAGCAAGGTCCGAACAGGGAGATGATTACAGGGTTTGGCAGGAACTCCCGGTGCTTGTTATTGTCAGCATGCTTGCCTATTTCTGTTTCCTTGAGCAGCTGCTGGTTGGAAAAATGGGAACCAGGGCAATTTTTGTCTCTCTTCCATTTTCATGCGTATTAGGCCTACTCTCCTCCGTGACATCAACGACCATGGTGAAGAGCAAGTTCATCTGGTTATATGCATCTGTCCAATTTCTTTCGGTGGTCCTATTCGCCCATATATTTTACCCCTTGGTTGGTAAGCATGCGGTTTTGTCGATCCTTCTTGCTACATTTGCGGGGTTTGGTGTTGTGATGAGTGGAAGTTCAATTGTTTTGGAGATTTCTCGATGGAGAAGAAGATGGCTAACTTTATCACAGCAGCAACGTGGTTCTTCGTCGATGATACAAGAAGGGCTATGA 1395 0.4581 MSAQQKETENHHTLSSNPTVDDTMGVTGETSHVNNEWKRDKIQLEIPTTTSEDCCRDFVGIRMPLTPSPTPSQKKVNFLVTSRSVDAPRPSSSSASRGKSSMRNILPRFGFKNRQSLDVEKAVTAASEASFSGHQEKSSIARSVSLTKIFTPKINRTSSLPVEEIGRANVESALVGTLGASPYQERETQGMIARSRSVPVNGKEKGVRRMDSVFRIIPSTPRVHEVNESTKDSDNGGGEDIGQEEAVCRICLVDLCEGGETLKMECSCKGELALAHQECAVKWFSIKGNKTCDVCKEEVRNLPVTLLRIRSVQTQNTGARSEQGDDYRVWQELPVLVIVSMLAYFCFLEQLLVGKMGTRAIFVSLPFSCVLGLLSSVTSTTMVKSKFIWLYASVQFLSVVLFAHIFYPLVGKHAVLSILLATFAGFGVVMSGSSIVLEISRWRRRWLTLSQQQRGSSSMIQEGL 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03407 464 MobiDBLite consensus disorder prediction 1 38 - -
Viun5g03407 464 SUPERFAMILY RING/U-box 244 299 - -
Viun5g03407 464 PANTHER OS02G0165000 PROTEIN 7 458 - -
Viun5g03407 464 MobiDBLite consensus disorder prediction 1 32 - -
Viun5g03407 464 CDD RING_CH-C4HC3_MARCH 248 296 - -
Viun5g03407 464 Pfam RING-variant domain 248 295 IPR011016 GO:0008270
Viun5g03407 464 ProSiteProfiles Zinc finger RING-CH-type profile. 240 302 IPR011016 GO:0008270
Viun5g03407 464 SMART ringv_2 247 296 IPR011016 GO:0008270
Viun5g03407 464 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 236 303 IPR013083 -
Viun5g03407 464 MobiDBLite consensus disorder prediction 82 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03407 Viun-Chr5 44285478 44288349 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g03407 245 302 C3H Transcription Factor Family AT2G37950 47.458 4.12e-13 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03407 - - gmx:100782610 674.47