Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03402 ATGTTTACAATGCGATTGTTATGGGGGCTAAGGCTGCCTCTGCTAATGATACTGATTCATCTTTTATTTCCCAACAGAGCAACCTACAAATTCTACGCTGAGGCTTTGATCACTTTCAAGGAGGGTTTGGTTGGAGGTCCACCACAATTAAGATGCAGCATTGTGAAATATGCATGTCAAAAGCAATGGCCTTGTCTTCACTGCTATAAACTAAAAGATTCAGAAACTCAAGATAGAAAACCAGGTGGAAGAAGGAGTTCTGTCATAATTGGTGGCGTTATTGCTGCCATTGTTGTCGTTGTAGTTCTGGTGACTGTCTATATCTGCTTGATGCGTGTTAAAAAATCTCTGAGGCAAACATCTGAGGCTGCTTCTTCTATGCCATCTCCCACTGTTGAGATGGGAAGAGTCAACACACAGCATGTCATTGCTTTCTCTCCACAAAACACAAGGGAGTTAACACTTTTGGAACTGGAACAAGCTACACAAAATTTCAGTCATAATAATATCATTGGTGAAGGTGGATTTGGTGTTGTATACAAGGGCTTGCTTCAAGATGGTTCTATTGTGGCTATAAAAAGGTGTCTATTTGCTCTGACAAAAGATTTCGTCCTAAATGTGAAACAGATTGCTCATGTTCACCACATTCATCTTGTGAAACTCATAGGCTATTATGAAGATAGCCATCAACAATTACTTGTATATGAATATCTCCCTAACGGCAATGTAGGGAGTCACCTATATGATAGTGAAGGTTTACCTGTTGGAAGGTTAAACTTGTGGCGAAGGTTATCTATTGCTTTAGGCGCATCCAAAGGAATGGAACATCTTCATAGTTTGGTTCCTCCTTTGGTTCACACAAACTTTAGAACTAGCAATGTTCTGTTAGATGAAACTTACACTGCCAAGGTTTCTGATTATGGATTCTGCAAACTGCAAACACAAGTTGATCATGCAGGCTCGTCTTCAAATGTAGATTGTTTTCTTGACCCAGAGTTGAGCTTTCCACAAAACTACTCAGAGAAGAGTGATGTATACAGTTTCGGGGTGTTCTTACTAGAGTTGATTTGTGGCTGTGAAGCACGTAACAAAAACATGTTACACCCAGATGAAAATATAGCATTTCAGGCAAAAAATCGTGTTGACTTGGACAAATTTGTTGACATGACCTTGGGATACAGAGAAAAGCATGGTGCCAGACGAATTTTGATGTTGGCATTGCAGTGTGTGGATGCTACTTCTAGAAGACCATCAATGGCGCAAATTGTGCTACAGTTGGAGCAAATTCAAAGAGAAATTGCTCCCATGTATTCTCAATTCAACGATGAGATTGGTGCCGTGACTCTTGGGAGTGAGCTTTTTCAATAA 1368 0.4013 MFTMRLLWGLRLPLLMILIHLLFPNRATYKFYAEALITFKEGLVGGPPQLRCSIVKYACQKQWPCLHCYKLKDSETQDRKPGGRRSSVIIGGVIAAIVVVVVLVTVYICLMRVKKSLRQTSEAASSMPSPTVEMGRVNTQHVIAFSPQNTRELTLLELEQATQNFSHNNIIGEGGFGVVYKGLLQDGSIVAIKRCLFALTKDFVLNVKQIAHVHHIHLVKLIGYYEDSHQQLLVYEYLPNGNVGSHLYDSEGLPVGRLNLWRRLSIALGASKGMEHLHSLVPPLVHTNFRTSNVLLDETYTAKVSDYGFCKLQTQVDHAGSSSNVDCFLDPELSFPQNYSEKSDVYSFGVFLLELICGCEARNKNMLHPDENIAFQAKNRVDLDKFVDMTLGYREKHGARRILMLALQCVDATSRRPSMAQIVLQLEQIQREIAPMYSQFNDEIGAVTLGSELFQ 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03402 455 Gene3D Phosphorylase Kinase; domain 1 127 237 - -
Viun5g03402 455 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 96 429 IPR047117 -
Viun5g03402 455 ProSiteProfiles Protein kinase domain profile. 165 437 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g03402 455 Pfam Protein tyrosine and serine/threonine kinase 168 425 IPR001245 GO:0004672|GO:0006468
Viun5g03402 455 FunFam receptor-like serine/threonine-protein kinase NCRK 138 237 - -
Viun5g03402 455 SUPERFAMILY Protein kinase-like (PK-like) 143 434 IPR011009 -
Viun5g03402 455 ProSitePatterns Protein kinases ATP-binding region signature. 171 193 IPR017441 GO:0005524
Viun5g03402 455 Gene3D Transferase(Phosphotransferase) domain 1 238 447 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03402 Viun-Chr5 44251216 44255349 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g03402 54 431 Receptor kinase-like Gene Family AT5G49780 34.606 1.27e-52 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXa Viun5g03402 PK_Tyr_Ser-Thr 1.1e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03402 - - gmx:100815066 694.115