Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03401 ATGTTTACAATGCGATTGTTATGGGGGCTAAGGCTGCCTCTGCTAATGATACTGATTCATCTTTTATTTCCCAACAGAGCAACCTACAAATTCTACGCTGAGGCTTTGATCACTTTCAAGGAGGGTTTGGTTGGAGGTCCACCACAATTAAGATGCAGCATTGTGAAATATGCATGTCAAAAGCAATGGCCTTGTCTTCACTGCTATAAACTAAAAGATTCAGGTGGAGTAACAACAAAGATAGATGGGAATAATGACATTCCAACACTTACACCTCTTCCAGAAACTCAAGATAGAAAACCAGGTGGAAGAAGGAGTTCTGTCATAATTGGTGGCGTTATTGCTGCCATTGTTGTCGTTGTAGTTCTGGTGACTGTCTATATCTGCTTGATGCGTGTTAAAAAATCTCTGAGGCAAACATCTGAGGCTGCTTCTTCTATGCCATCTCCCACTGTTGAGATGGGAAGAGTCAACACACAGCATGTCATTGCTTTCTCTCCACAAAACACAAGGGAGTTAACACTTTTGGAACTGGAACAAGCTACACAAAATTTCAGTCATAATAATATCATTGGTGAAGGTGGATTTGGTGTTGTATACAAGGGCTTGCTTCAAGATGGTTCTATTGTGGCTATAAAAAGGTGTCTATTTGCTCTGACAAAAGATTTCGTCCTAAATGTGAAACAGATTGCTCATGTTCACCACATTCATCTTGTGAAACTCATAGGCTATTATGAAGATAGCCATCAACAATTACTTGTATATGAATATCTCCCTAACGGCAATGTAGGGAGTCACCTATATGATAGTGAAGGTTTACCTGTTGGAAGGTTAAACTTGTGGCGAAGGTTATCTATTGCTTTAGGCGCATCCAAAGGAATGGAACATCTTCATAGTTTGGTTCCTCCTTTGGTTCACACAAACTTTAGAACTAGCAATGTTCTGTTAGATGAAACTTACACTGCCAAGGTTTCTGATTATGGATTCTGCAAACTGCAAACACAAGTTGATCATGCAGGCTCGTCTTCAAATGTAGATTGTTTTCTTGACCCAGAGTTGAGCTTTCCACAAAACTACTCAGAGAAGAGTGATGTATACAGTTTCGGGGTGTTCTTACTAGAGTTGATTTGTGGCTGTGAAGCACGTAACAAAAACATGTTACACCCAGATGAAAATATAGCATTTCAGGCAAAAAATCGTGTTGACTTGGACAAATTTGTTGACATGACCTTGGGATACAGAGAAAAGCATGGTGCCAGACGAATTTTGATGTTGGCATTGCAGTGTGTGGATGCTACTTCTAGAAGACCATCAATGGCGCAAATTGTGCTACAGTTGGAGCAAATTCAAAGAGAAATTGCTCCCATGTATTCTCAATTCAACGATGAGATTGGTGCCGTGACTCTTGGGAGTGAGCTTTTTCAATAA 1428 0.4013 MFTMRLLWGLRLPLLMILIHLLFPNRATYKFYAEALITFKEGLVGGPPQLRCSIVKYACQKQWPCLHCYKLKDSGGVTTKIDGNNDIPTLTPLPETQDRKPGGRRSSVIIGGVIAAIVVVVVLVTVYICLMRVKKSLRQTSEAASSMPSPTVEMGRVNTQHVIAFSPQNTRELTLLELEQATQNFSHNNIIGEGGFGVVYKGLLQDGSIVAIKRCLFALTKDFVLNVKQIAHVHHIHLVKLIGYYEDSHQQLLVYEYLPNGNVGSHLYDSEGLPVGRLNLWRRLSIALGASKGMEHLHSLVPPLVHTNFRTSNVLLDETYTAKVSDYGFCKLQTQVDHAGSSSNVDCFLDPELSFPQNYSEKSDVYSFGVFLLELICGCEARNKNMLHPDENIAFQAKNRVDLDKFVDMTLGYREKHGARRILMLALQCVDATSRRPSMAQIVLQLEQIQREIAPMYSQFNDEIGAVTLGSELFQ 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03401 475 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 116 449 IPR047117 -
Viun5g03401 475 Pfam Protein tyrosine and serine/threonine kinase 188 445 IPR001245 GO:0004672|GO:0006468
Viun5g03401 475 FunFam receptor-like serine/threonine-protein kinase NCRK 158 257 - -
Viun5g03401 475 ProSiteProfiles Protein kinase domain profile. 185 457 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g03401 475 Gene3D Transferase(Phosphotransferase) domain 1 258 467 - -
Viun5g03401 475 SUPERFAMILY Protein kinase-like (PK-like) 163 454 IPR011009 -
Viun5g03401 475 ProSitePatterns Protein kinases ATP-binding region signature. 191 213 IPR017441 GO:0005524
Viun5g03401 475 Gene3D Phosphorylase Kinase; domain 1 147 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03401 Viun-Chr5 44251216 44255349 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g03401 102 451 Receptor kinase-like Gene Family AT5G49780 36.088 3.46e-52 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXa Viun5g03401 PK_Tyr_Ser-Thr 1.2e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03401 - - gmx:100815066 741.495