Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03398 ATGGCCAAAGACGTTGAGCAGGTCACGGAGCAACCCGAATACTCCGCCAAGGACTACCACGACCCACCTCCGGCGCCGTTGATCGACCCCGATGAGCTCACCAAGTGGTCCTTGTACAGAGCCGCCATAGCCGAATTCATAGCCACCCTCCTCTTCCTTTACATCACCGTCTTGACCATCATCGGATACAAGAGACAGAGCGACACCTCCATCGCCGGTAACACCGAGTGCGACGGGGTAGGCATTTTGGGCATCGCTTGGGCCTTCGGTGGCATGATCTTCATCCTCGTTTACTGCACCGCCGGCATCTCCGGGGGCCACATCAACCCTGCAGTGACGTTTGGGTTGTTCCTGGGGCGCAAGGTGTCGTTGGTGAGGGCGTTGCTGTACATGGTGGCGCAGTGCGCCGGCGCAATATGCGGTGCTGGGTTGGCGAAGGGGTTCCAGAAATCGTTCTACAACAGGTACGGCGGAGGGGCTAACTCCGTGAGCGACGGCTACAACAAAGGCACTGCCGTGGGTGCTGAAATCATCGGTACCTTTGTTCTTGTCTACACTGTTTTCTCCGCCACTGATCCTAAGAGAAACGCTAGGGACTCTCATGTTCCTGTGCTAGCACCCCTTCCCATCGGGTTTGCCGTCTTCATGGTTCACTTGGCTACAATCCCTATCACCGGAACCGGCATTAACCCGGCAAGGAGTTTCGGACCAGCTGTGATCTTCAACAATGACAAAGTCTGGGACGACCAATGGATTTACTGGGTTGGACCGTTCGTGGGAGCTGCGGTGGCTGCATTTTACCACCAATACATTCTGAGAGGATCAGCAATAAAGGCTCTTGGATCGTTCAGGAGCAACGCATAA 864 0.5556 MAKDVEQVTEQPEYSAKDYHDPPPAPLIDPDELTKWSLYRAAIAEFIATLLFLYITVLTIIGYKRQSDTSIAGNTECDGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLVRALLYMVAQCAGAICGAGLAKGFQKSFYNRYGGGANSVSDGYNKGTAVGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGPAVIFNNDKVWDDQWIYWVGPFVGAAVAAFYHQYILRGSAIKALGSFRSNA 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03398 287 NCBIfam MIP family channel protein 44 268 IPR000425 GO:0015267|GO:0016020|GO:0055085
Viun5g03398 287 Gene3D Glycerol uptake facilitator protein. 25 287 IPR023271 -
Viun5g03398 287 PRINTS Major intrinsic protein family signature 126 145 IPR000425 GO:0015267|GO:0016020|GO:0055085
Viun5g03398 287 PRINTS Major intrinsic protein family signature 251 271 IPR000425 GO:0015267|GO:0016020|GO:0055085
Viun5g03398 287 PRINTS Major intrinsic protein family signature 40 59 IPR000425 GO:0015267|GO:0016020|GO:0055085
Viun5g03398 287 PRINTS Major intrinsic protein family signature 175 193 IPR000425 GO:0015267|GO:0016020|GO:0055085
Viun5g03398 287 PRINTS Major intrinsic protein family signature 89 113 IPR000425 GO:0015267|GO:0016020|GO:0055085
Viun5g03398 287 PRINTS Major intrinsic protein family signature 211 233 IPR000425 GO:0015267|GO:0016020|GO:0055085
Viun5g03398 287 MobiDBLite consensus disorder prediction 1 17 - -
Viun5g03398 287 ProSitePatterns MIP family signature. 107 115 IPR022357 -
Viun5g03398 287 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 8 276 IPR034294 -
Viun5g03398 287 CDD MIP 40 271 IPR000425 GO:0015267|GO:0016020|GO:0055085
Viun5g03398 287 MobiDBLite consensus disorder prediction 1 25 - -
Viun5g03398 287 Pfam Major intrinsic protein 32 268 IPR000425 GO:0015267|GO:0016020|GO:0055085
Viun5g03398 287 FunFam Probable aquaporin PIP1-2 25 287 - -
Viun5g03398 287 SUPERFAMILY Aquaporin-like 32 272 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03398 Viun-Chr5 44235716 44237373 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g03398 1 287 Major Intrinsic Protein MIP AT2G37170 79.861 1.79e-170 473
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03398 K09872 - gmx:732581 560.066
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g03398 5 44235716 44237373 Viun5g03398 5 44235716 44237373 ECH
Viun1g02368 1 34126139 34128403 Viun5g03398 5 44235716 44237373 ECH
Viun5g03398 5 44235716 44237373 Viun11g01942 11 35224991 35226126 PCT