Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03393 ATGAAGGAAACGGAGAAGAGTTTGGATCCGCAGCTGTGGCACGCATGTGCCGGCGGCATGGTTCAGATGCCGCCGGTGAACTCCAAGGTGTTCTACTTTCCTCAGGGGCACGCGGAACACGCGCAGTCCAACCTCGATTTCGGAGCCTCCCGGATTCCTATTCCGCCGCTCGTTCTCTGCCGCGTGGCGGCTGTCAAATTCGTCGCCGACCCAGAAACTGACGAGGTCTTCGCCAGGTTAAGGTTGGTTCCTCTCAGAAACACCGAGCTTGACCACGAAGAAAGCGAGAACGTTGACGGTAACGGCGCGGAGGGTTCTGAAAAGCCAGCGTCTTTCGCGAAGACGTTAACTCAATCGGACGCGAACAATGGTGGGGGATTCTCCGTGCCGAGATACTGCGCGGAGACCATTTTCCCGCGGCTGGATTACTCGGCGGAGCCACCGGTGCAGACGGTGATCGCGAAGGACGTGCACGGCGAGGTGTGGAAGTTCCGGCACATTTACCGAGGGACGCCTCGTCGGCACTTACTTACCACGGGATGGAGCAGTTTCGTGAACCAGAAGAAACTGGTTGCTGGGGATTCCATAGTGTTTCTGCGGGCGGAGAATGGCGATCTCTGCGTGGGGATTCGTAGGGCGAAGAGAGGGGGTGTTGGTGGGCCCGAGGCGCCGTGTGGGTGGAGTTCTGGTGGTGGTGGTGGTGGTGGCGGGATTGGCCCTTACGGGGCGTTTTCAGCTTTCTTGAGGGAGGAGAGCAAGGTGGTGAGGAATGGGTGTGGGAGGCCGAAAGTGAGTGGTGAGTCTGTGAGGGAGGCTATTACTATGGCTGCTAACAACCAACCCTTTGAGGTTGTTTATTACCCTCGAGCCAACACTCCCGAGTTTTGTATCAGAACTTCTGCTGTGAGGGGTGCTATGAGGATTCAGTGGTGCTCTGGGATGAGGTTTAAGATGCCCTTTGAGACTGAGGACTCTTCCAGGATAAGCTGGTTCATGGGCACCATAGCTTCTGTTCAGGTTCTTGATCCTATCCGCTGGCCCAATTCGCCTTGGAGGCTTCTTCAGGTTACGTGGGATGAGCCAGATTTGCTGCAGAATGTGAAGCGCGTAAGTCCATGGTTGGTTGAGTTGGTATCTAACATGCCAGTGATCCATCTGGCACCATTCTCTCCGCCAAGGAAGAAGCTTCGGTTTCCACAGAGCCCAGAGTTTCCCCTTGATGTTCAATTTCCGATAGCAACGTTTTCAGGCAACCCCTTTGGGTGTAGCGGCAGTAGCAGCCCCTTGTGTTGTCTATCTGATAATGCTCCTGCAGGCATACAGGGAGCCAGGCATGCTCAAATTGGAATATCTTTGTCAGATCTCCACCTTAACCATAATAAGCTGCAGTTGGGGTTGCTTCCAACCAACGTTCGCCAGCTTCATTTGCAAAATGGGATTTCTAATGTCAACATCACCAACCATGGTAAGAGTAAAGAAAGCCTTTCGTGCTTGCTCACCATGGCAAGTCCACGCAAGAGTTTGGAGAAATCTGATCAAGTCAAGACACACCAATTTTTGCTTTTCGGTCAACCGATACTCACCGAGCAACAAATCTCTACATCTTCCACCGCAACCGCAACCGATGATGACAACAACAAGGAGAAGAAGGAGAGGGGCTTCCTTAGTGACTCCCTCTCTTCAGTTTCCCCCGGAAAGTCATCTTCCACCGCCGAGTTCTCTTGGCAACTCGCTTCTGATACCAGTCATTGCAAGGTTTTCATGGAGTCAGAAGATGTGGGACGAACCCTTGACTTGTCCTGTCTTGCTTCTTATGATGAACTTTACATGAGACTCGCCACCATGTTCGGAATAGAACGCTCTGAGATGTTGAGTCATGTTCTCTATCGCGATGCAACCGGTGCTCTCAAACAAACCGGAGAAGAACCATTCAGTGAGTTCATGAAGACCGCTAAAAGATTGACAATTCTGAGTGATTCAAGCAGCAAAGACAGTAGAAGGGTTTGGATCACAGGAACTCGGAATGCTGAACATGGATTGGATGCTACTTCGAATAAGACAGGTCCTATGAGCATATTTGCTTAA 2085 0.5199 MKETEKSLDPQLWHACAGGMVQMPPVNSKVFYFPQGHAEHAQSNLDFGASRIPIPPLVLCRVAAVKFVADPETDEVFARLRLVPLRNTELDHEESENVDGNGAEGSEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSAEPPVQTVIAKDVHGEVWKFRHIYRGTPRRHLLTTGWSSFVNQKKLVAGDSIVFLRAENGDLCVGIRRAKRGGVGGPEAPCGWSSGGGGGGGGIGPYGAFSAFLREESKVVRNGCGRPKVSGESVREAITMAANNQPFEVVYYPRANTPEFCIRTSAVRGAMRIQWCSGMRFKMPFETEDSSRISWFMGTIASVQVLDPIRWPNSPWRLLQVTWDEPDLLQNVKRVSPWLVELVSNMPVIHLAPFSPPRKKLRFPQSPEFPLDVQFPIATFSGNPFGCSGSSSPLCCLSDNAPAGIQGARHAQIGISLSDLHLNHNKLQLGLLPTNVRQLHLQNGISNVNITNHGKSKESLSCLLTMASPRKSLEKSDQVKTHQFLLFGQPILTEQQISTSSTATATDDDNNKEKKERGFLSDSLSSVSPGKSSSTAEFSWQLASDTSHCKVFMESEDVGRTLDLSCLASYDELYMRLATMFGIERSEMLSHVLYRDATGALKQTGEEPFSEFMKTAKRLTILSDSSSKDSRRVWITGTRNAEHGLDATSNKTGPMSIFA 694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03393 694 Pfam B3 DNA binding domain 112 213 IPR003340 GO:0003677
Viun5g03393 694 MobiDBLite consensus disorder prediction 532 568 - -
Viun5g03393 694 FunFam Auxin response factor 110 214 - -
Viun5g03393 694 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 6 661 IPR044835 GO:0003677|GO:0006355|GO:0009725
Viun5g03393 694 Gene3D - 110 214 IPR015300 -
Viun5g03393 694 Pfam Auxin response factor 272 355 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Viun5g03393 694 ProSiteProfiles B3 DNA-binding domain profile. 112 214 IPR003340 GO:0003677
Viun5g03393 694 CDD B3_DNA 111 212 IPR003340 GO:0003677
Viun5g03393 694 Gene3D - 310 382 - -
Viun5g03393 694 SMART B3_2 112 214 IPR003340 GO:0003677
Viun5g03393 694 Gene3D - 578 665 - -
Viun5g03393 694 ProSiteProfiles PB1 domain profile. 581 661 IPR000270 GO:0005515
Viun5g03393 694 SUPERFAMILY DNA-binding pseudobarrel domain 107 213 IPR015300 -
Viun5g03393 694 FunFam Auxin response factor 310 383 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03393 Viun-Chr5 44141914 44145145 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g03393 4 663 B3 DNA Binding Superfamily AT4G30080 59.823 0.0 758
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Viun5g03393 B3 4.4e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03393 - - gmx:100778135 1191.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g03393 5 44141914 44145145 Viun5g03393 5 44141914 44145145 ECH
Viun5g03393 5 44141914 44145145 Viun11g01931 11 35101660 35104984 PCT