Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03392 ATGTCTGAGGATATTGCTAACATGAAGGACTCTTGGTTTTTCGACAATAACTTCAACGGTCTGTCAGATGATATTTTTGATGATGTCGTGGGCTTTTTTGATTTCCCACTGGAAGAAGTAGAAGATGACTGGGATTCTCAATTTAAATGTCTTGAAGACCAACATTCTGAGGTTTTTTCAGCATCATCAAATGGGCTGTGTGCCAAACCACAAACTGAAAACCCTCAATTTGGGACGGAGTTCTCTGTTTCTTGTAATGGGATTTCCCCAATCAAACAGCTGGCAAAGGCTCCTGGACCAACATATGGAAAAACCATTCCCCTCAAGAATGTCACTTTCAATGGAAAAGATTTGCATCAATTCCGAACCTACAGCCCAGTTTCAGTTTTTGAAAGCAGCAGTTCTTCCTCTGTTGAGAATTTGAGCTTTGATCGACCTGTCATTCCGGTAAAGCGTGCTCGAAGTAAACGGCAGCGCCGATCAAGCTTCAGTCCTCTATTTTCCATTCCTTTCGTCCAGGCTTTGCAAAAACAGCAGAGGGCATCAGGTTCTGAATCAGATTTTGGAGCAAATGTTGTTGGGAATATGTCTAACAAAGTAAAAAGCCACAAGAAAAAGGATTTGTCCCTGCTATCGGAAGATGTTGAGATGATGAGATCCTCACATCTGGTGTCAGATCCCCCAAGGAAATGCATGCATTGTGAGGTGACAAAGACCCCACAATGGAGAGAGGGACCTATGGGTCCCAAAACACTTTGCAATGCTTGCGGTGTTCGGTACAGGTCCGGCCGCCTCTTTCCCGAATACCGGCCGGCAGCTAGTCCAACTTTTGTTGCATCATTGCACTCAAACTGTCACAAGAAGGTCGTGGAGATGAGAAGCAAAGTGCAGGAGGGTGTTGAGGGTTCTGTGTTTGCTTCATCAAATCTCCATGGAAATTCTGTAGGATAA 951 0.4437 MSEDIANMKDSWFFDNNFNGLSDDIFDDVVGFFDFPLEEVEDDWDSQFKCLEDQHSEVFSASSNGLCAKPQTENPQFGTEFSVSCNGISPIKQLAKAPGPTYGKTIPLKNVTFNGKDLHQFRTYSPVSVFESSSSSSVENLSFDRPVIPVKRARSKRQRRSSFSPLFSIPFVQALQKQQRASGSESDFGANVVGNMSNKVKSHKKKDLSLLSEDVEMMRSSHLVSDPPRKCMHCEVTKTPQWREGPMGPKTLCNACGVRYRSGRLFPEYRPAASPTFVASLHSNCHKKVVEMRSKVQEGVEGSVFASSNLHGNSVG 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03392 316 SMART GATA_3 225 275 IPR000679 GO:0006355|GO:0043565
Viun5g03392 316 Gene3D - 224 296 IPR013088 GO:0006355|GO:0008270
Viun5g03392 316 PANTHER GATA TRANSCRIPTION FACTOR 41 297 - -
Viun5g03392 316 CDD ZnF_GATA 230 277 IPR000679 GO:0006355|GO:0043565
Viun5g03392 316 ProSitePatterns GATA-type zinc finger domain. 231 256 IPR000679 GO:0006355|GO:0043565
Viun5g03392 316 Pfam GATA zinc finger 231 264 IPR000679 GO:0006355|GO:0043565
Viun5g03392 316 ProSiteProfiles GATA-type zinc finger domain profile. 225 261 IPR000679 GO:0006355|GO:0043565
Viun5g03392 316 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 226 287 - -
Viun5g03392 316 FunFam GATA transcription factor 220 306 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03392 Viun-Chr5 44131196 44135408 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g03392 15 305 C2C2-Gata Transcription Factor Family AT1G08010 35.669 3.64e-51 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Viun5g03392 GATA 3.5e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03392 - - gmx:100813303 458.759
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g03392 5 44131196 44135408 Viun5g03392 5 44131196 44135408 ECH