Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03378 ATGAAGCCTCAATTAAATGTTGCTGTGGCTCTAGTTATTAGCTTGCTCTGTATCCAGCATTCATTTTGTGATGAACCTTCTGATACTGGACCAAACAAGTGGAAATGTAGATGCTCTTCATTACAAGGGAACCAGATATACTCTCCTGCTAACTGTTCCAAGTCATGTGATTGTCATTCAGATGCTGAAGAGAGTGCTTCCACATGGACATGCTTATGTGATTCGAATGGGTTTCCTGAAGTGTCAGCAGATGGCCATAACCTTAACTGTTTTAATGCCTGCAATTGCACGTGGGGAACTGTGAGGATGCCACAAGGTTCAAAGAAGCAAATTTCGAGCAAGATTGTTGTGGTTATTCTATCAGTATGTGTTACATGCACAACTGTTGCATTTCTTGCCTCAGTTATATGTCAGGTCTGCCGAAGGGAGAGATGTTCTATTCAATCACCAATGATCTCATCAGATAAAGAAACAAGTTACAGTAGCACCACCAACTTATTCAGTCATAAGACTTCTTCGCCTGTTAGTAATATTACAGGATGCTTTCAGAAGTCCTCTTTGTTGTTTGGTAGCCAAAGACAAACCTTTTATGGAAACATTATTCAATTTTCATTTGCTGAACTGGAAAATGCCACCGAAAATTTTTCAACTTCCAATCTAACTGGACTAGGTGGAAGCAGTTATGTATACCGTGGTCGGCTGAAAGATGGCAGTAATGTGGCAGTCAAGAGACTAAAAGATCAAAGAGGGCCTGAGGCAGACTCTGAATTTTTCACAGAGATTGAACTATTGTCTAGACTTCATCATTGTCATCTGGTGCCATTAGTAGGATACTGCTCAGAACTAAAAGGAAAAAATGTTCAAAGGTTGCTAGTGTTTGAATACATGACTAATGGAAATTTGAGGGATCGCTTAGATGGAGTTTTTGGAAAGAAAATGGACTGGTCAACTCGAGTTAGAATTGCATTAGGAGCTGCAAGGGGCTTGGAGTATCTTCATGAAGCAGCTGCTCCCAGAATTCTGCACAGAGATGTCAAATCAACAAACATTCTTCTGGACAAAAATTGGCAAGCAAAAATAACTGATCTTGGTATGGCTAAAAGCTTGAGAGCTGATGATCACCCCAGTCGTTCAGATTCTCCAGCAAGAATGCAGGGAACATTTGGGTATTTTGCACCTGAGTATGCAATTGTTGGGAGAGCCTCTCTTGAGTCTGATGTCTTCAGTTTTGGAGTGGTTCTTCTTGAGCTTATCAGTGGTCGGCAACCTATCCACAAATCTGCAGGCAAAGAACAAAGTCTTGTTATATGGGCAAGTCCTCGCTTAAAGGATAGCAGGCGAGTAATAACCGAGTTGGCCGATCCACAGTTGAAAGGAAACTTCCCAGAAGAAGAGCTGCATATAATGGCATACTTAGCTAAGGAGTGCTTGCTGTTGGATCCTGACACCCGGCCAAGTATGACTGAAGTTGTTCAAATTCTTTCCAGTATCTCCCCAGACAGATCTAGAAGGAGAAGAAACATTCCAGTCAGACTTTTTCAGGAACCGGAGGACTTGGAGAATCAAAGACAAACTCCAAGTATATTTCCAACTTGTAATTTGTTGCCGTTAGGTGTTGACCACAATCTTAATGATGGGAATGAAAATGAAGATGCAAATACAGTTTCAAGTGAGCATATGGAGAGTTTGATCCTCTTTAGTCCAAAGGGTGAAAGCTGGCATGCATCAGAGGAGGAGATGGTAGATTTAACTGAGCCTCGTTTCGAATCATTTTTCATGTCAAACCCCAATTTCCCTTGA 1800 0.4139 MKPQLNVAVALVISLLCIQHSFCDEPSDTGPNKWKCRCSSLQGNQIYSPANCSKSCDCHSDAEESASTWTCLCDSNGFPEVSADGHNLNCFNACNCTWGTVRMPQGSKKQISSKIVVVILSVCVTCTTVAFLASVICQVCRRERCSIQSPMISSDKETSYSSTTNLFSHKTSSPVSNITGCFQKSSLLFGSQRQTFYGNIIQFSFAELENATENFSTSNLTGLGGSSYVYRGRLKDGSNVAVKRLKDQRGPEADSEFFTEIELLSRLHHCHLVPLVGYCSELKGKNVQRLLVFEYMTNGNLRDRLDGVFGKKMDWSTRVRIALGAARGLEYLHEAAAPRILHRDVKSTNILLDKNWQAKITDLGMAKSLRADDHPSRSDSPARMQGTFGYFAPEYAIVGRASLESDVFSFGVVLLELISGRQPIHKSAGKEQSLVIWASPRLKDSRRVITELADPQLKGNFPEEELHIMAYLAKECLLLDPDTRPSMTEVVQILSSISPDRSRRRRNIPVRLFQEPEDLENQRQTPSIFPTCNLLPLGVDHNLNDGNENEDANTVSSEHMESLILFSPKGESWHASEEEMVDLTEPRFESFFMSNPNFP 599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03378 599 PANTHER OS01G0750732 PROTEIN 64 508 - -
Viun5g03378 599 ProSiteProfiles Protein kinase domain profile. 215 497 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g03378 599 SMART serkin_6 215 497 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g03378 599 ProSitePatterns Serine/Threonine protein kinases active-site signature. 340 352 IPR008271 GO:0004672|GO:0006468
Viun5g03378 599 SUPERFAMILY Protein kinase-like (PK-like) 195 494 IPR011009 -
Viun5g03378 599 Gene3D Phosphorylase Kinase; domain 1 186 295 - -
Viun5g03378 599 FunFam receptor-like serine/threonine-protein kinase NCRK 189 295 - -
Viun5g03378 599 Pfam Protein kinase domain 219 492 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g03378 599 Gene3D Transferase(Phosphotransferase) domain 1 296 512 - -
Viun5g03378 599 CDD STKc_IRAK 222 497 - -
Viun5g03378 599 FunFam receptor-like serine/threonine-protein kinase NCRK 296 506 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03378 Viun-Chr5 44047830 44052814 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g03378 1 595 Receptor kinase-like Gene Family AT2G28250 52.224 0.0 578
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XVI Viun5g03378 Pkinase 3.1e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03378 - - gmx:100499641 1018.45