Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03373 ATGCAGCTTGACTTGATCACGGATGATGATTGGAATCAGCAAGATAATTTGAAGGTTAAGTTTATCCCCTTTAACAGGTTGGAATTGATGAAGCCTCAATTAAATGTTGCTGTGGCTCTAGTTATTAGCTTGCTCTGTATCCAGCATTCATTTTGTGATGAACCTTCTGATACTGGACCAAACAAGTGGAAATGTAGATGCTCTTCATTACAAGGGAACCAGATATACTCTCCTGCTAACTGTTCCAAGTCATGTGATTGTCATTCAGATGCTGAAGAGAGTGCTTCCACATGGACATGCTTATGTGATTCGAATGGGTTTCCTGAAGTGTCAGCAGATGGCCATAACCTTAACTGTTTTAATGCCTGCAATTGCACGTGGGGAACTGTGAGGATGCCACAAGGTTCAAAGAAGCAAATTTCGAGCAAGATTGTTGTGGTTATTCTATCAGTATGTGTTACATGCACAACTGTTGCATTTCTTGCCTCAGTTATATGTCAGGTCTGCCGAAGGGAGAGATGTTCTATTCAATCACCAATGATCTCATCAGATAAAGAAACAAGTTACAGTAGCACCACCAACTTATTCAGTCATAAGACTTCTTCGCCTGTTAGTAATATTACAGGATGCTTTCAGAAGTCCTCTTTGTTGTTTGGTAGCCAAAGACAAACCTTTTATGGAAACATTATTCAATTTTCATTTGCTGAACTGGAAAATGCCACCGAAAATTTTTCAACTTCCAATCTAACTGGACTAGGTGGAAGCAGTTATGTATACCGTGGTCGGCTGAAAGATGGCAGTAATGTGGCAGTCAAGAGACTAAAAGATCAAAGAGGGCCTGAGGCAGACTCTGAATTTTTCACAGAGATTGAACTATTGTCTAGACTTCATCATTGTCATCTGGTGCCATTAGTAGGATACTGCTCAGAACTAAAAGGAAAAAATGTTCAAAGGTTGCTAGTGTTTGAATACATGACTAATGGAAATTTGAGGGATCGCTTAGATGGAGTTTTTGGAAAGAAAATGGACTGGTCAACTCGAGTTAGAATTGCATTAGGAGCTGCAAGGGGCTTGGAGTATCTTCATGAAGCAGCTGCTCCCAGAATTCTGCACAGAGATGTCAAATCAACAAACATTCTTCTGGACAAAAATTGGCAAGCAAAAATAACTGATCTTGGTATGGCTAAAAGCTTGAGAGCTGATGATCACCCCAGTCGTTCAGATTCTCCAGCAAGAATGCAGGGAACATTTGGGTATTTTGCACCTGAGTATGCAATTGTTGGGAGAGCCTCTCTTGAGTCTGATGTCTTCAGTTTTGGAGTGGTTCTTCTTGAGCTTATCAGTGGTCGGCAACCTATCCACAAATCTGCAGGCAAAGAACAAAGTCTTGTTATATGGGCAAGTCCTCGCTTAAAGGATAGCAGGCGAGTAATAACCGAGTTGGCCGATCCACAGTTGAAAGGAAACTTCCCAGAAGAAGAGCTGCATATAATGGCATACTTAGCTAAGGAGTGCTTGCTGTTGGATCCTGACACCCGGCCAAGTATGACTGAAGTTGTTCAAATTCTTTCCAGTATCTCCCCAGACAGATCTAGAAGGAGAAGAAACATTCCAGTCAGACTTTTTCAGGAACCGGAGGACTTGGAGAATCAAAGACAAACTCCAAGTATATTTCCAACTTGTAATTTGTTGCCGTTAGGTGTTGACCACAATCTTAATGATGGGAATGAAAATGAAGATGCAAATACAGTTTCAAGTGAGCATATGGAGAGTTTGATCCTCTTTAGTCCAAAGGGTGAAAGCTGGCATGCATCAGAGGAGGAGATGGTAGATTTAACTGAGCCTCGTTTCGAATCATTTTTCATGTCAAACCCCAATTTCCCTTGA 1887 0.4123 MQLDLITDDDWNQQDNLKVKFIPFNRLELMKPQLNVAVALVISLLCIQHSFCDEPSDTGPNKWKCRCSSLQGNQIYSPANCSKSCDCHSDAEESASTWTCLCDSNGFPEVSADGHNLNCFNACNCTWGTVRMPQGSKKQISSKIVVVILSVCVTCTTVAFLASVICQVCRRERCSIQSPMISSDKETSYSSTTNLFSHKTSSPVSNITGCFQKSSLLFGSQRQTFYGNIIQFSFAELENATENFSTSNLTGLGGSSYVYRGRLKDGSNVAVKRLKDQRGPEADSEFFTEIELLSRLHHCHLVPLVGYCSELKGKNVQRLLVFEYMTNGNLRDRLDGVFGKKMDWSTRVRIALGAARGLEYLHEAAAPRILHRDVKSTNILLDKNWQAKITDLGMAKSLRADDHPSRSDSPARMQGTFGYFAPEYAIVGRASLESDVFSFGVVLLELISGRQPIHKSAGKEQSLVIWASPRLKDSRRVITELADPQLKGNFPEEELHIMAYLAKECLLLDPDTRPSMTEVVQILSSISPDRSRRRRNIPVRLFQEPEDLENQRQTPSIFPTCNLLPLGVDHNLNDGNENEDANTVSSEHMESLILFSPKGESWHASEEEMVDLTEPRFESFFMSNPNFP 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03373 628 Gene3D Phosphorylase Kinase; domain 1 216 324 - -
Viun5g03373 628 FunFam receptor-like serine/threonine-protein kinase NCRK 218 324 - -
Viun5g03373 628 ProSitePatterns Serine/Threonine protein kinases active-site signature. 369 381 IPR008271 GO:0004672|GO:0006468
Viun5g03373 628 Pfam Protein kinase domain 248 521 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g03373 628 SMART serkin_6 244 526 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g03373 628 FunFam receptor-like serine/threonine-protein kinase NCRK 325 535 - -
Viun5g03373 628 CDD STKc_IRAK 251 526 - -
Viun5g03373 628 ProSiteProfiles Protein kinase domain profile. 244 526 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g03373 628 SUPERFAMILY Protein kinase-like (PK-like) 224 523 IPR011009 -
Viun5g03373 628 Gene3D Transferase(Phosphotransferase) domain 1 325 541 - -
Viun5g03373 628 PANTHER OS01G0750732 PROTEIN 93 537 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03373 Viun-Chr5 44047635 44052814 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g03373 30 624 Receptor kinase-like Gene Family AT2G28250 52.224 0.0 579
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XVI Viun5g03373 Pkinase 3.5e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03373 - - gmx:100499641 1018.45