Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03363 ATGAGCAGTTTAAGGCCTGAGTCTCATGTGGCACAGCAAATTCGGCGCGAAAAATTGAGAATCCAAAACAGTTCTCAACCTCTGCACGAATTCCCCAACAATCTTGAACCGTTATCGTTACATCCGGGGTTTAATAACTTTGATCTTCTTCATGTTAGGAATGTTAGGAACGCTAACATGCTTGACGAACAAGTTGTTTATCCACCAGAAATGCCTAACTTCTCCACTTCTTTGAACCCTTTGTCTGCTCCAAAGAACGCTTTGGAGTATCATCAAGAAATAGATGCAGCTGAAGCGAGTAACAGGCTGATGATGAATCAGTATGGTTCGTTTTCCCATTCCATGCCCGCTACTCATTCTTCCCACAAGGAACAGTGCGAACTTCGTAATTTGGGAAATTGGAGGAACAGTGCTCCCCAGCAAGGATCTGATTGGTTTGTAAATTATCCAAGTAATGCCAATTCTTTTTTGTCTTCTGAGCTCAACAATGTGTCATCTTACAACGAACTAATGGATGTACAGTGTAGCAATGCATCTGATGAAATCAGTGGTAGACAAATTCAAAAGCAATTAGGTGGACTGCATAATCCTCCTCCTCCTTCTCCACTGTATCAAAATGCTTTGCAAGATATTGTGAAGTCGGCTTCTATCGGTGCTCACACCAGGCAAGACATGACTTCCCTAATGCAACAAAATGACCACAGCATTTGGGTGGGTAATGGTTCTGAAGTTGAGCTTCAACAGCAGAGTTATGATAATCAGCCAAATCCGTTGCGTTTCGGATGGACAAATCGAGCAATAGATAATATCCCGAGTGATTCACTTCCTCAGAGCTTATCCCTGTCACTTTCATCGAACGCACAACCCAAGCCTTCTGTTTCTCAACATGAGCAAGGGTCTACATCCGATGATCCTCGTTGTTTGAAGAATATGAAGCCCTCTATTGTTTCTAGAGATTCTGCGAAATCACTCCAAGACACGGTGGGAATGCCTTCGAAGAGTACCATGAGTTACCGAAGTGTGGGTCCCCTTGGCCCTTTCACTGGGTATGCTACTATTCTTAAGAGTTCAAGGTTCTTAAAGTCTGTCCAACAGTTGTTAGATGAGATTTTCTGTGTATCTGGTGCAAAGTTTGCGAAATCATATGATGTTTCAGAACGGGTTTCTCCGGAAATTAGTGCTTCCACTTCTGCGGATACTGTTACTGTCAACGAAACCGGGGTTACTGCAAAAGGTAGTAACTCAGGTTCTTCATCAACTATGTTGTATAATGTCTCAAAGGAAAATAGTGCTGATTTGGGAGTTGGGAGTAGCTTTGGTCTTTCTTCGCGGCCAGATTATCAACAGAAGAAAGCAAAACTGCTGTACATGCAAGAGGAGGTTACGAGGCAATGCAAGCAGTACCATCTACAAATGCAAATGGTTATTTCTTCGTTCGAGTCAGTGGCGGGTCTTGGTTCTGCAACTCCTTACATCTCCATGGCTCTGAAGTCAGTATCAAAACACTTCAGATGTTTAAAGAATTCTATCTCAGATCAGCTAAAGCTTATGAGCGAAGCCTTGGGAGAGGATGTGTCAAAACCCTCTTGCAGTAGTGGCAGTAAAGCTGACACTACTATGGCAAGGATAAGATGCAGCATGGACCAAAGTTTTCTAAAGAACAAATCTGGCAGAGGTGGTACTACGGATCTTCTTGATCCCCAACAGCATGTGTGGAGGCCCCAGAGAGGGTTGCCAGAGCGTGCAGTGGCAATTCTTAAAGCCTGGTTATTTGAGCATTTTCTTCATCCTTACCCTACAGACACCGATAAACACATGCTGGCTAGTCAAACGGGTCTATCACGGAATCAGGTATCAAATTGGTTCATAAATGCTCGAGTACGAGTATGGAAGCCAATGGTTGAGGAAATACACATGCTTGAAACAAAAGCAACAGGCACCAGAGAGAAGAGTGGTAAACACGATCAGGGAACATCTTCTGGCCCTGAAGGCGGTGATACCAGCCAAACTAGAGTGGATAAGCCTTTGAGCAATATTGGTATGAATTCAATACCTGAAAACCGATTTGAGGGCATGGAAATGGAATCAAGCAATGCTGAGGAAAGAGGGTTGAATGAAGAACAATGGAGTCAAGAGAAAAGATCTAAATTGGAATGCCAAATGACTTCAAACAATATGGATGGTACATTGATGGGTTTTGTGCCATATCGACGTGGTGGCCTTGAGGTTGGTGGGCTTGGTTCTGTGTCACTAACATTAGGTCTTAGACATGGCGTTGAAGGAGTACAACACCAACAACAATTGCAAGAGGAACAGCTTCGACATCATCACCTTGGAGGCCACATGATCCGTGACTATGTCGGCTGA 2367 0.4368 MSSLRPESHVAQQIRREKLRIQNSSQPLHEFPNNLEPLSLHPGFNNFDLLHVRNVRNANMLDEQVVYPPEMPNFSTSLNPLSAPKNALEYHQEIDAAEASNRLMMNQYGSFSHSMPATHSSHKEQCELRNLGNWRNSAPQQGSDWFVNYPSNANSFLSSELNNVSSYNELMDVQCSNASDEISGRQIQKQLGGLHNPPPPSPLYQNALQDIVKSASIGAHTRQDMTSLMQQNDHSIWVGNGSEVELQQQSYDNQPNPLRFGWTNRAIDNIPSDSLPQSLSLSLSSNAQPKPSVSQHEQGSTSDDPRCLKNMKPSIVSRDSAKSLQDTVGMPSKSTMSYRSVGPLGPFTGYATILKSSRFLKSVQQLLDEIFCVSGAKFAKSYDVSERVSPEISASTSADTVTVNETGVTAKGSNSGSSSTMLYNVSKENSADLGVGSSFGLSSRPDYQQKKAKLLYMQEEVTRQCKQYHLQMQMVISSFESVAGLGSATPYISMALKSVSKHFRCLKNSISDQLKLMSEALGEDVSKPSCSSGSKADTTMARIRCSMDQSFLKNKSGRGGTTDLLDPQQHVWRPQRGLPERAVAILKAWLFEHFLHPYPTDTDKHMLASQTGLSRNQVSNWFINARVRVWKPMVEEIHMLETKATGTREKSGKHDQGTSSGPEGGDTSQTRVDKPLSNIGMNSIPENRFEGMEMESSNAEERGLNEEQWSQEKRSKLECQMTSNNMDGTLMGFVPYRRGGLEVGGLGSVSLTLGLRHGVEGVQHQQQLQEEQLRHHHLGGHMIRDYVG 788
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03363 788 SMART prehox3 348 512 IPR006563 -
Viun5g03363 788 Pfam Homeobox KN domain 589 628 IPR008422 GO:0003677|GO:0006355
Viun5g03363 788 CDD homeodomain 572 633 IPR001356 GO:0003677
Viun5g03363 788 MobiDBLite consensus disorder prediction 657 684 - -
Viun5g03363 788 SUPERFAMILY Homeodomain-like 574 638 IPR009057 -
Viun5g03363 788 MobiDBLite consensus disorder prediction 641 656 - -
Viun5g03363 788 ProSiteProfiles 'Homeobox' domain profile. 569 632 IPR001356 GO:0003677
Viun5g03363 788 FunFam BEL1-like homeodomain protein 9 575 637 - -
Viun5g03363 788 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 234 657 - -
Viun5g03363 788 MobiDBLite consensus disorder prediction 641 684 - -
Viun5g03363 788 MobiDBLite consensus disorder prediction 277 336 - -
Viun5g03363 788 MobiDBLite consensus disorder prediction 316 336 - -
Viun5g03363 788 Pfam Associated with HOX 353 511 IPR006563 -
Viun5g03363 788 SMART HOX_1 572 636 IPR001356 GO:0003677
Viun5g03363 788 MobiDBLite consensus disorder prediction 277 307 - -
Viun5g03363 788 Gene3D - 575 637 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03363 Viun-Chr5 43951247 43957471 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g03363 276 660 Homeobox Transcription Factor Family AT5G02030 41.710 5.53e-72 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Viun5g03363 POX 2.1e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03363 - - gmx:100790583 1188.71