Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03349 ATGGCCAAGCTCAGCGTAAGAACCAGCAAGAGAAGTGTGAGTGACATTGTGAAGTTCAAATTCGTGGAGAAGCTTCAGAAGAGACTCTTACCTGGGAGAAGCAAAGAAGGGTCTGTGTCAAACTCAACGTATGTTCCAGAGGACGTGAAGGAAGGACACTTCGCTGTGATTGCTGAGGGTGGAGAAGAACAGAAGAGGTTCGTGCTGCCACTCAGTTGTTTATCCAACCCTAAGTTCTTGAAGCTGTTGGAGCAAGCAGAAGAAGAGTATGGGTTTGATCATGAAGGTGCTGTCACCATTCCTTGCAGGCCCAGTGAGCTTCAGAGGATACTGTCTCACCAATGGCATCAACAAGGAACTCAAACTTCTGCTCCAAGAAAAACTTACACAAAATAA 396 0.4621 MAKLSVRTSKRSVSDIVKFKFVEKLQKRLLPGRSKEGSVSNSTYVPEDVKEGHFAVIAEGGEEQKRFVLPLSCLSNPKFLKLLEQAEEEYGFDHEGAVTIPCRPSELQRILSHQWHQQGTQTSAPRKTYTK 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03349 131 Pfam Auxin responsive protein 32 112 IPR003676 GO:0009733
Viun5g03349 131 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 33 110 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03349 Viun-Chr5 43851839 43852465 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g03349 25 124 Calmodulin-binding Proteins AT3G43120 41.748 6.08e-17 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03349 K14488 - gmx:102668167 185.267
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g03349 5 43851839 43852465 Viun5g03349 5 43851839 43852465 ECH
Viun5g03349 5 43851839 43852465 Viun11g01875 11 34634236 34635517 PCT