Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03348 ATGGTGTCCGACGCAAGCAAGAAGAAAGCTGCACAGAAGAAGGCGGCGGCGGCGGCCAAGAGAGGTGGCAAAGCGGTAGCTGCTTCTTCCAAAACGTCGACCTCCGAGAAGCCAGCCGACAAGCTCGCCGACGGAATTGGGGAGATTTATATTTCCGATCGAACCTGCACCGGCGTCCTCTGCTCTCATCCTCTTTCTAGGGATATTAGGATAGAATCTCTCTCAGTTACTTTCCATGGGCATGATTTGATAGTTGATTCTGAATTAGAGCTAAATTATGGAAGACGTTATGGCTTGCTCGGATTAAATGGTTGTGGAAAATCTACCCTTCTTACGGCAATAGGTTGTCGAGAGCTACCTATTCCAGATCACATGGATATTTATCACCTTACCAGAGAAATCGAAGCCTCTGATATGTCTGCATTGGAGGCTGTCATAAGCTGTGATGAGGAAAGGTTGAAATTGGAGAAAGAAGCTGAAGCTTTGGCAGCTCAGGATGATGGGGGTGGTGAAACACTTGAACGTGTTTATGAACGATTGGAAGCCTTAGATGCATCAACTGCAGAAAAGCGTGCTGCCGAAATTTTATTTGGTCTTGGTTTCAACAAGCAGATGCAGGCAAAGAAGACCCGTGATTTTTCTGGTGGCTGGAGAATGAGGATAGCTTTAGCTCGTGCTCTATTTATGAACCCGACCATTCTTTTACTTGATGAACCAACCAATCACCTCGATTTGGAGGCTTGTGTGTGGCTAGAAGAGAATTTGAAAAGGTTTGACCGCATTCTGGTTGTGGTTTCACACTCCCAGGATTTCCTTAACGGTGTCTGCACAAATATCATCCACATGCAAAACAAGAAGCTGAAGCTCTATACTGGGAATTATGATCAATATGTTCAGACACGTGCTGAGCTTGAAGAGAACCAGATGAAGCAGTACAAATGGGAGCAGGAGCAGATTTCCTCCATGAAGGAATATATAGCTCGATTTGGTCATGGATCAGCCAAACTGGCACGCCAAGCCCAGAGTAAAGAGAAAACTCTAGCAAAAATGGAGCGAGGTGGACTGACAGAGAAGGTGGTAAGAGACAAAATTCTGGTATTCCGGTTTGTTGACGTGGGAAAACTTCCACCCCCTGTCCTCCAATTCGTGGAGGTGACATTTGGTTACACTCCTGATAATCTGATCTACAAAAACCTTGACTTTGGGGTTGATTTAGACTCTAGGATTGCTCTGGTTGGACCCAATGGTGCTGGGAAGAGTACGTTACTGAAACTAATGACTGGCGATCTGGTACCTGTGGATGGCATGGTTCGACGCCACAATCACCTTCGAATTGCACAATTTCACCAGCACTTGGCTGAAAAGCTAGACATGGAATTGTCTGCTCTACAGTTTATGATAAAAGAATACCCCGGAAATGAGGAGGAGAGGATGAGAGCAGCAATTGGTAAATTTGGACTGTCGGGTAAAGCGCAGGTGATGCCGATGAAGAATTTATCTGACGGGCAGAGGAGCCGCGTGATATTCGCATGGTTAGCTTATAGACAGCCTCACTTGCTCCTTCTGGATGAGCCAACTAACCATTTAGATATTGAAACAATTGACTCCTTGGCTGAGGCACTCAATGAATGGGACGGTGGCATGGTGCTTGTTAGTCATGATTTTAGGCTCATAAATCAAGTGGCCCACGAGATATGGGTTTGCGCTGATCAAGCTGTGACCAGATGGGAAGGTGACATCATGGATTTTAAGGAGCATTTAAGATCAAAGGCTGGTTTATCTGACTGA 1788 0.4575 MVSDASKKKAAQKKAAAAAKRGGKAVAASSKTSTSEKPADKLADGIGEIYISDRTCTGVLCSHPLSRDIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGCRELPIPDHMDIYHLTREIEASDMSALEAVISCDEERLKLEKEAEALAAQDDGGGETLERVYERLEALDASTAEKRAAEILFGLGFNKQMQAKKTRDFSGGWRMRIALARALFMNPTILLLDEPTNHLDLEACVWLEENLKRFDRILVVVSHSQDFLNGVCTNIIHMQNKKLKLYTGNYDQYVQTRAELEENQMKQYKWEQEQISSMKEYIARFGHGSAKLARQAQSKEKTLAKMERGGLTEKVVRDKILVFRFVDVGKLPPPVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRIALVGPNGAGKSTLLKLMTGDLVPVDGMVRRHNHLRIAQFHQHLAEKLDMELSALQFMIKEYPGNEEERMRAAIGKFGLSGKAQVMPMKNLSDGQRSRVIFAWLAYRQPHLLLLDEPTNHLDIETIDSLAEALNEWDGGMVLVSHDFRLINQVAHEIWVCADQAVTRWEGDIMDFKEHLRSKAGLSD 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03348 595 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 39 590 - -
Viun5g03348 595 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 363 574 IPR027417 -
Viun5g03348 595 Pfam ABC transporter 280 352 IPR032781 -
Viun5g03348 595 SMART AAA_5 405 593 IPR003593 GO:0016887
Viun5g03348 595 SMART AAA_5 93 295 IPR003593 GO:0016887
Viun5g03348 595 Gene3D - 356 593 IPR027417 -
Viun5g03348 595 Coils Coil 287 307 - -
Viun5g03348 595 FunFam Abc transporter f family member 1 69 333 - -
Viun5g03348 595 Pfam ABC transporter 396 527 IPR003439 GO:0005524
Viun5g03348 595 MobiDBLite consensus disorder prediction 1 39 - -
Viun5g03348 595 CDD ABCF_EF-3 380 571 - -
Viun5g03348 595 Gene3D - 69 333 IPR027417 -
Viun5g03348 595 ProSitePatterns ABC transporters family signature. 213 227 IPR017871 GO:0005524|GO:0016887
Viun5g03348 595 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 69 309 IPR003439 GO:0005524
Viun5g03348 595 CDD ABCF_EF-3 69 286 - -
Viun5g03348 595 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 380 595 IPR003439 GO:0005524
Viun5g03348 595 Pfam ABC transporter 87 241 IPR003439 GO:0005524
Viun5g03348 595 FunFam ATP-binding cassette sub-family F member 3 340 594 - -
Viun5g03348 595 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 63 314 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03348 Viun-Chr5 43844545 43848698 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g03348 89 267 Calmodulin-binding Proteins AT2G36910 28.962 2.72e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03348 K06185 - gmx:100785099 1086.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g03348 5 43844545 43848698 Viun5g03348 5 43844545 43848698 ECH
Viun5g03348 5 43844545 43848698 Viun11g01874 11 34628412 34631757 PCT