Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03346 ATGCAGAGATCCGGCTATGGCTCCGACGGAATATACAGATCTCTCAGACCTTCAATCGTTTTCCCCAAACAACCCAACCTCACACTCGTTTCTCACCTCTTCAACAGAGTCGCACCGTTTTCCTCCAAACAAGCTCTTATCGATGCCGATTCTTCCCAAACCGTTTCATTCGCGCAGTTGAAGACGCTAACCGTTAAAGTCTCCCACGGCCTCCTCCGCCTCGGCGTTGCCAAAAACGACGTCGTCCTCTTCCTCGCCCCCAACGATATCCGCTACATCGTCTGTTTCCTCGCTGTCACCTCCATCGGCGCCGTCGTCACTACCGTCAACCCCGCCTACACCGCCGCTGAGGTCACCAAACAAGCCAAAGACTCCAATCCCAAACTTGTCATCACTGTCCCCGAACTCTGGGACAAGCTCCAACACCTCAACCTCCCCGCGGTGTTCCTCCACTCCCAGGCGCACTCCCATGCGACTAGCTTCGACGCGCTCGTCCAACTCGCGGGGTCGCATACCGAGTTTCCGAAAGTTGACGTCAAGCAGAGTGATACGGCGGTGCTGCTGTACTCCTCCGGGACCACCGGCGTGAGCAAGGGCGTGGTTCTAACGCACGGGAACTTCGTGGCGGCATCGTTGATGATTGGGTTGGACGATGATTTGGCCGGGGAGATGCATAGCGTGTTCCTCTGCGTTCTGCCGATGTTTCATGTGTTTGGTTTGACGGTGATTTCGTACGCGCAGCTTCAGAGGGGCAACGCTGTGGTGTCTCTGAAGAAGTTTGAGTTTGAACTGGTCTTGAAGACGGTTGAGAAGTTTAGAGTGTCGCATTTGTGGGTTGTGCCTCCGATTATCCTTGCTTTGGCCAAACATGGTTTGGTCGATAAGTACGATCTTTCCTCGCTGAAGCATATTGGTTCCGGCGCTGCTCCTCTTGGGAAAGAGTTGATGGAGGAGTGTGCTAAGCGTTTCCCTCGTGCCACTGTTGCTCAGGGATATGGTATGACTGAAACGTGTGGGATTGTTTCTGTGGAGAATACAAGGATGGGGATTCGGCATAGTGGGTCTGCGGGAATGCTTGTTTCGGGAGTGGAAGCTCAAATAGTTAGCGTGGATACGCTGAAGCCTCTCCCTCCTGGACAGTTGGGGGAGATATGGGTACGGGGTCCTAACATGATGCAAGGATATCATAACAATCCCCAAGCCACAACATTGACTAAAGATAAAAAAGGGTGGGTACATACAGGTGATCTTGGATATTTTGATGAGGATGGACAACTTTTTGTTGTTGACCGCATCAAAGAACTCATCAAGTATAAAGGTTATCAGGTTGCACCAGCAGAACTTGAAGGGCTTCTTGTTTCCCACCCTGAAATACTTGATGCTGTTGTCATCCCATATCCTGATGCTGAAGCTGGTGAGGTTCCAGTTGCCTATGTCGTTCGCTCACCCAATAGTTCACTGACTGAGGAAGATATTCAAAAGTTTATTGCTAATCAGGTAGCACCTTTCAAAAGATTACGAAGGGTGACATTCATCAATGCTGTTCCTAAGACAGCTTCAGGAAAAATTCTCCGAAGAGAGCTTATTGAGAAAGTAAGATCCAAAATATGA 1611 0.504 MQRSGYGSDGIYRSLRPSIVFPKQPNLTLVSHLFNRVAPFSSKQALIDADSSQTVSFAQLKTLTVKVSHGLLRLGVAKNDVVLFLAPNDIRYIVCFLAVTSIGAVVTTVNPAYTAAEVTKQAKDSNPKLVITVPELWDKLQHLNLPAVFLHSQAHSHATSFDALVQLAGSHTEFPKVDVKQSDTAVLLYSSGTTGVSKGVVLTHGNFVAASLMIGLDDDLAGEMHSVFLCVLPMFHVFGLTVISYAQLQRGNAVVSLKKFEFELVLKTVEKFRVSHLWVVPPIILALAKHGLVDKYDLSSLKHIGSGAAPLGKELMEECAKRFPRATVAQGYGMTETCGIVSVENTRMGIRHSGSAGMLVSGVEAQIVSVDTLKPLPPGQLGEIWVRGPNMMQGYHNNPQATTLTKDKKGWVHTGDLGYFDEDGQLFVVDRIKELIKYKGYQVAPAELEGLLVSHPEILDAVVIPYPDAEAGEVPVAYVVRSPNSSLTEEDIQKFIANQVAPFKRLRRVTFINAVPKTASGKILRRELIEKVRSKI 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03346 536 SUPERFAMILY Acetyl-CoA synthetase-like 18 534 - -
Viun5g03346 536 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 9 531 - -
Viun5g03346 536 FunFam Long-chain-fatty-acid--CoA ligase FadD 13 433 - -
Viun5g03346 536 FunFam 4-coumarate--CoA ligase 2 434 535 - -
Viun5g03346 536 ProSitePatterns Putative AMP-binding domain signature. 187 198 IPR020845 -
Viun5g03346 536 Gene3D - 9 433 IPR042099 -
Viun5g03346 536 Gene3D - 434 535 IPR045851 -
Viun5g03346 536 Pfam AMP-binding enzyme 36 438 IPR000873 -
Viun5g03346 536 Pfam AMP-binding enzyme C-terminal domain 447 522 IPR025110 -
Viun5g03346 536 CDD 4CL 21 528 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03346 Viun-Chr5 43812847 43816336 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g03346 1 536 Monolignol Biosynthesis Gene Families AT4G05160 66.912 0.0 776
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03346 K01904 - gmx:100797843 939.102
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g03346 5 43812847 43816336 Viun5g03346 5 43812847 43816336 ECH
Viun5g03346 5 43812847 43816336 Viun11g01871 11 34590422 34593450 PCT