LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun5g03346	ATGCAGAGATCCGGCTATGGCTCCGACGGAATATACAGATCTCTCAGACCTTCAATCGTTTTCCCCAAACAACCCAACCTCACACTCGTTTCTCACCTCTTCAACAGAGTCGCACCGTTTTCCTCCAAACAAGCTCTTATCGATGCCGATTCTTCCCAAACCGTTTCATTCGCGCAGTTGAAGACGCTAACCGTTAAAGTCTCCCACGGCCTCCTCCGCCTCGGCGTTGCCAAAAACGACGTCGTCCTCTTCCTCGCCCCCAACGATATCCGCTACATCGTCTGTTTCCTCGCTGTCACCTCCATCGGCGCCGTCGTCACTACCGTCAACCCCGCCTACACCGCCGCTGAGGTCACCAAACAAGCCAAAGACTCCAATCCCAAACTTGTCATCACTGTCCCCGAACTCTGGGACAAGCTCCAACACCTCAACCTCCCCGCGGTGTTCCTCCACTCCCAGGCGCACTCCCATGCGACTAGCTTCGACGCGCTCGTCCAACTCGCGGGGTCGCATACCGAGTTTCCGAAAGTTGACGTCAAGCAGAGTGATACGGCGGTGCTGCTGTACTCCTCCGGGACCACCGGCGTGAGCAAGGGCGTGGTTCTAACGCACGGGAACTTCGTGGCGGCATCGTTGATGATTGGGTTGGACGATGATTTGGCCGGGGAGATGCATAGCGTGTTCCTCTGCGTTCTGCCGATGTTTCATGTGTTTGGTTTGACGGTGATTTCGTACGCGCAGCTTCAGAGGGGCAACGCTGTGGTGTCTCTGAAGAAGTTTGAGTTTGAACTGGTCTTGAAGACGGTTGAGAAGTTTAGAGTGTCGCATTTGTGGGTTGTGCCTCCGATTATCCTTGCTTTGGCCAAACATGGTTTGGTCGATAAGTACGATCTTTCCTCGCTGAAGCATATTGGTTCCGGCGCTGCTCCTCTTGGGAAAGAGTTGATGGAGGAGTGTGCTAAGCGTTTCCCTCGTGCCACTGTTGCTCAGGGATATGGTATGACTGAAACGTGTGGGATTGTTTCTGTGGAGAATACAAGGATGGGGATTCGGCATAGTGGGTCTGCGGGAATGCTTGTTTCGGGAGTGGAAGCTCAAATAGTTAGCGTGGATACGCTGAAGCCTCTCCCTCCTGGACAGTTGGGGGAGATATGGGTACGGGGTCCTAACATGATGCAAGGATATCATAACAATCCCCAAGCCACAACATTGACTAAAGATAAAAAAGGGTGGGTACATACAGGTGATCTTGGATATTTTGATGAGGATGGACAACTTTTTGTTGTTGACCGCATCAAAGAACTCATCAAGTATAAAGGTTATCAGGTTGCACCAGCAGAACTTGAAGGGCTTCTTGTTTCCCACCCTGAAATACTTGATGCTGTTGTCATCCCATATCCTGATGCTGAAGCTGGTGAGGTTCCAGTTGCCTATGTCGTTCGCTCACCCAATAGTTCACTGACTGAGGAAGATATTCAAAAGTTTATTGCTAATCAGGTAGCACCTTTCAAAAGATTACGAAGGGTGACATTCATCAATGCTGTTCCTAAGACAGCTTCAGGAAAAATTCTCCGAAGAGAGCTTATTGAGAAAGTAAGATCCAAAATATGA	1611	0.504	MQRSGYGSDGIYRSLRPSIVFPKQPNLTLVSHLFNRVAPFSSKQALIDADSSQTVSFAQLKTLTVKVSHGLLRLGVAKNDVVLFLAPNDIRYIVCFLAVTSIGAVVTTVNPAYTAAEVTKQAKDSNPKLVITVPELWDKLQHLNLPAVFLHSQAHSHATSFDALVQLAGSHTEFPKVDVKQSDTAVLLYSSGTTGVSKGVVLTHGNFVAASLMIGLDDDLAGEMHSVFLCVLPMFHVFGLTVISYAQLQRGNAVVSLKKFEFELVLKTVEKFRVSHLWVVPPIILALAKHGLVDKYDLSSLKHIGSGAAPLGKELMEECAKRFPRATVAQGYGMTETCGIVSVENTRMGIRHSGSAGMLVSGVEAQIVSVDTLKPLPPGQLGEIWVRGPNMMQGYHNNPQATTLTKDKKGWVHTGDLGYFDEDGQLFVVDRIKELIKYKGYQVAPAELEGLLVSHPEILDAVVIPYPDAEAGEVPVAYVVRSPNSSLTEEDIQKFIANQVAPFKRLRRVTFINAVPKTASGKILRRELIEKVRSKI	536

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Viun5g03346	536	SUPERFAMILY	Acetyl-CoA synthetase-like	18	534	-	-
Viun5g03346	536	PANTHER	LONG-CHAIN-FATTY-ACID--COA LIGASE	9	531	-	-
Viun5g03346	536	FunFam	Long-chain-fatty-acid--CoA ligase FadD	13	433	-	-
Viun5g03346	536	FunFam	4-coumarate--CoA ligase 2	434	535	-	-
Viun5g03346	536	ProSitePatterns	Putative AMP-binding domain signature.	187	198	IPR020845	-
Viun5g03346	536	Gene3D	-	9	433	IPR042099	-
Viun5g03346	536	Gene3D	-	434	535	IPR045851	-
Viun5g03346	536	Pfam	AMP-binding enzyme	36	438	IPR000873	-
Viun5g03346	536	Pfam	AMP-binding enzyme C-terminal domain	447	522	IPR025110	-
Viun5g03346	536	CDD	4CL	21	528	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun5g03346	Viun-Chr5	43812847	43816336	Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun5g03346	1	536	Monolignol Biosynthesis Gene Families	AT4G05160	66.912	0.0	776

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun5g03346	K01904		-	gmx:100797843	939.102

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Viun5g03346	5	43812847	43816336	Viun5g03346	5	43812847	43816336	ECH
	Viun5g03346	5	43812847	43816336	Viun11g01871	11	34590422	34593450	PCT

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