Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03345 ATGGGAAGAGCTCCTTGCTGTGACAAGGCAAATGTGAAGAGAGGACCATGGTCACCAGAAGAAGACTCAAAGCTGAAGGAGTACATAGAGAAGCATGGAACTGGAGGGAATTGGATTGCTCTTCCTCAGAAAGCTGGTCTAAGGAGATGTGGAAAAAGTTGCAGACTTAGATGGCTTAACTATCTTAGGCCCAACATTAAGCACGGCGAATTCTCCGACGAGGAAGACAGAATAATATGCAGCCTTTATGCTAATATTGGAAGCAGGTGGTCAATTATAGCTGCTCAGTTACCAGGGAGGACTGACAATGATATCAAGAACTACTGGAACACCAAGCTGAAGAGGAAACTCATGGGGTTGCTTCCTGCATCTCATCAAAGAATAGCACCCTATCAACACTCCTCCTCCCAAAACCCTCCCTCACCATTTTCTTCTCAGACATCAATCTACAGAGACTACTGCAACAACTCTCCTTATTACATCCCAGCACCAACCTCCTCGTCTTTCCCATGCCTTCAACAGATTTCTGTTCCTTCAAGTAATTACACAAACACAACCTCATCTCTTCCCTTTTATCAGAACCAAGATCCTACGGTCGGTGTCAGTCCCATGCAGTATTACCCCACCACAGACAGCTCCATGCTTGTGTTTGGAAGTGAAACAAGCTGCAGTTCCTCTGATGGGAGCTGCAGCCAGGTGAGCCTGGGGAGAGAGATAAAACAAGAAGAAATGGGATTTCAGAATTTGATGTTCGGAGATCAGCACATGCAGATGAACAAGTTGATGCTGAGTCAAGGAAACATGAATCATGATGGAGGTGAAGAGTATGTGAAGCATTGGACAGAGAAGCCAAATGGGTGTGTGTTCCAGACGCAAGAAACAGCACTGGATTATGATCTTGAGGTTATTAAGCAACTGATTAGTAGTAACAGTAGCAGTAATAATAGTAATAATGGGTATTTTAGTATTGATGAAAACAAGACGGAGAAGGGAGTGTACTACAACTACTGA 1011 0.4411 MGRAPCCDKANVKRGPWSPEEDSKLKEYIEKHGTGGNWIALPQKAGLRRCGKSCRLRWLNYLRPNIKHGEFSDEEDRIICSLYANIGSRWSIIAAQLPGRTDNDIKNYWNTKLKRKLMGLLPASHQRIAPYQHSSSQNPPSPFSSQTSIYRDYCNNSPYYIPAPTSSSFPCLQQISVPSSNYTNTTSSLPFYQNQDPTVGVSPMQYYPTTDSSMLVFGSETSCSSSDGSCSQVSLGREIKQEEMGFQNLMFGDQHMQMNKLMLSQGNMNHDGGEEYVKHWTEKPNGCVFQTQETALDYDLEVIKQLISSNSSSNNSNNGYFSIDENKTEKGVYYNY 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03345 336 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Viun5g03345 336 SMART sant 13 64 IPR001005 -
Viun5g03345 336 SMART sant 67 115 IPR001005 -
Viun5g03345 336 FunFam Transcription factor RAX3 7 68 - -
Viun5g03345 336 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Viun5g03345 336 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Viun5g03345 336 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Viun5g03345 336 CDD SANT 16 62 IPR001005 -
Viun5g03345 336 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Viun5g03345 336 Gene3D - 7 68 - -
Viun5g03345 336 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Viun5g03345 336 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Viun5g03345 336 PANTHER OS09G0431300 PROTEIN 1 281 - -
Viun5g03345 336 FunFam Transcription factor MYB36 70 139 - -
Viun5g03345 336 CDD SANT 70 113 IPR001005 -
Viun5g03345 336 Gene3D - 69 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03345 Viun-Chr5 43805101 43807014 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g03345 1 119 MYB Transcription Factor Family AT5G57620 88.235 2.99e-77 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Viun5g03345 Myb_DNA-binding 9.3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03345 K09422 - gmx:100796382 541.962