Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03335 ATGAACGCTATGGATGCAATTCACCAAGACACACCGTCGTACATCAATGATTTTGAGCTTTATGACTTCGTTGACAATCCAAATTTTGATCAGTTCATCAATTTGATCAGAGGGGAGAATGAAGATGCTAACTGTGACTTTAGTTCTGATCTCATCACTGATTGTTTTGTTAACAATCAGCTCCTTCCATGCCCTGCAAACCCTTTTGATCAGAACTATAACAATGCTGTGAATGTCTATGATCAAAGCTCCACGTTTAGCTCCTTTTCATGCTTTGATGGGGAGATAAAGGGAGAAGGAGAAGGAGAAAGAGAAGAAGAAGAAGAAGAACACGATGGAGAACATTTTTCTGAAACAACAACGACAACAACAACGACCAAGAACGATGATTCCAAACCCAAACTGAAAAACGACAGGTCTAAGACTCTCATTTCTGAGAGGAGAAGGAGAGGCCGAATGAAGGAGAAGCTTTACGCATTGCGTTCTTTGGTTCCCAACATAACAAAGATGGACAAGGCTTCCATAATTGGAGACGCAGTAGCATACGTGCATGAACTTCAAGCTCAAGCTAGGAAGCTGAAGGCTGAAGTTGCAGGACTTGAAGCATCTTTATTAGTGTCTGAAAATTATCAAGGATCAATTAACAATCCCAAAAATGTGCAAACTGCAAGGAATAGTCATCCAATCTGCAAGAAGATCATGCAGGTGGAGATTGTGCAAGTGGAGAAAAGAGGGTATTATGCAAAAATAGTGTGCAATAAAGGAGAAGGAGTGGCTGCATCGTTGTTCAGAGCTCTTGAGTCTCTTGCAGGCTTTAGTGTTCAGAATTCAAACTTGGCTACAGTTTGTAACAGTTTTCAACTTACATTTACATTGAATATTAATTCATTGGTGTGTTGA 900 0.4011 MNAMDAIHQDTPSYINDFELYDFVDNPNFDQFINLIRGENEDANCDFSSDLITDCFVNNQLLPCPANPFDQNYNNAVNVYDQSSTFSSFSCFDGEIKGEGEGEREEEEEEHDGEHFSETTTTTTTTKNDDSKPKLKNDRSKTLISERRRRGRMKEKLYALRSLVPNITKMDKASIIGDAVAYVHELQAQARKLKAEVAGLEASLLVSENYQGSINNPKNVQTARNSHPICKKIMQVEIVQVEKRGYYAKIVCNKGEGVAASLFRALESLAGFSVQNSNLATVCNSFQLTFTLNINSLVC 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03335 299 MobiDBLite consensus disorder prediction 91 143 - -
Viun5g03335 299 Pfam Helix-loop-helix DNA-binding domain 144 187 IPR011598 GO:0046983
Viun5g03335 299 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 137 210 IPR036638 GO:0046983
Viun5g03335 299 Gene3D - 127 203 IPR036638 GO:0046983
Viun5g03335 299 FunFam Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 133 203 - -
Viun5g03335 299 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 137 186 IPR011598 GO:0046983
Viun5g03335 299 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 16 289 - -
Viun5g03335 299 MobiDBLite consensus disorder prediction 129 143 - -
Viun5g03335 299 Coils Coil 183 203 - -
Viun5g03335 299 SMART finulus 143 192 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03335 Viun-Chr5 43694137 43695598 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g03335 13 293 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G28160 51.370 8.92e-88 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Viun5g03335 HLH 4.1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03335 K26214 - gmx:100805451 420.624