Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03334 ATGAACGCTATGGATGCAATTCACCAAGACACACCGTCGTACATCAATGATTTTGAGCTTTATGACTTCGTTGACAATCCAAATTTTGATCAGTTCATCAATTTGATCAGAGGGGAGAATGAAGATGCTAACTGTGACTTTAGTTCTGATCTCATCACTGATTGTTTTGTTAACAATCAGCTCCTTCCATGCCCTGCAAACCCTTTTGATCAGAACTATAACAATGCTGTGAATGTCTATGATCAAAGCTCCACGTTTAGCTCCTTTTCATGCTTTGATGGGGAGATAAAGGGAGAAGGAGAAGGAGAAAGAGAAGAAGAAGAAGAAGAACACGATGGAGAACATTTTTCTGAAACAACAACGACAACAACAACGACCAAGAACGATGATTCCAAACCCAAACTGAAAAACGACAGGTCTAAGACTCTCATTTCTGAGAGGAGAAGGAGAGGCCGAATGAAGGAGAAGCTTTACGCATTGCGTTCTTTGGTTCCCAACATAACAAAGATGGACAAGGCTTCCATAATTGGAGACGCAGTAGCATACGTGCATGAACTTCAAGCTCAAGCTAGGAAGCTGAAGGCTGAAGTTGCAGGACTTGAAGCATCTTTATTAGTGTCTGAAAATTATCAAGGATCAATTAACAATCCCAAAAATGTGCAAACTGCAAGGAATAGTCATCCAATCTGCAAGAAGATCATGCAGGTGGAGATTGTGCAAGTGGAGAAAAGAGGGTATTATGCAAAAATAGTGTGCAATAAAGGAGAAGGAGTGGCTGCATCGTTGTTCAGAGCTCTTGAGTCTCTTGCAGGCTTTAGTGTTCAGAATTCAAACTTGGCTACAGTTTGTAACAGTTTTCAACTTACATTTACATTGAATATAAAAGGGTCTGAGCCAGAGATTAACCTGCAAAATTTGAAGCTATGGGTGACTGGCGCTCTTCTGAACCAAGGTTTTGAATTCGTGGCATCTTTTTCTGGTTGA 984 0.4065 MNAMDAIHQDTPSYINDFELYDFVDNPNFDQFINLIRGENEDANCDFSSDLITDCFVNNQLLPCPANPFDQNYNNAVNVYDQSSTFSSFSCFDGEIKGEGEGEREEEEEEHDGEHFSETTTTTTTTKNDDSKPKLKNDRSKTLISERRRRGRMKEKLYALRSLVPNITKMDKASIIGDAVAYVHELQAQARKLKAEVAGLEASLLVSENYQGSINNPKNVQTARNSHPICKKIMQVEIVQVEKRGYYAKIVCNKGEGVAASLFRALESLAGFSVQNSNLATVCNSFQLTFTLNIKGSEPEINLQNLKLWVTGALLNQGFEFVASFSG 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03334 327 Gene3D - 127 203 IPR036638 GO:0046983
Viun5g03334 327 MobiDBLite consensus disorder prediction 91 143 - -
Viun5g03334 327 Pfam Helix-loop-helix DNA-binding domain 144 187 IPR011598 GO:0046983
Viun5g03334 327 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 137 186 IPR011598 GO:0046983
Viun5g03334 327 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 137 210 IPR036638 GO:0046983
Viun5g03334 327 MobiDBLite consensus disorder prediction 129 143 - -
Viun5g03334 327 FunFam Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 133 203 - -
Viun5g03334 327 Coils Coil 183 203 - -
Viun5g03334 327 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 16 317 - -
Viun5g03334 327 SMART finulus 143 192 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03334 Viun-Chr5 43693865 43695596 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g03334 13 319 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G28160 51.887 5.99e-99 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Viun5g03334 HLH 4.7e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03334 K26214 - gmx:100805451 475.707
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g03334 5 43693865 43695596 Viun5g03334 5 43693865 43695596 ECH
Viun5g03334 5 43693865 43695596 Viun11g01842 11 34431660 34433501 PCT