Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03323 ATGTTGTCAGAAATATTAGACATGGAAGGCATGGCGGCGGAGGAACTTGTCTCATGCAACAACGATCCCACCAACATAGCCAAAGGGAAGCGGACAAAGCGGCGCTTGAGGCCTTTGTCGCCTTGTGTTGTCACCGCCGTTACTGCCACGGCCGCCGCCGCCGCCATGACATCAAGCTGTTCAAGTGCTTCTGGCGGCGGCGGAGGGTCGTTTTCGTCTATCACCTTGGAGGAGGAAGAGGAAGACATGGCAAACTGTTTGATTCTCCTGGCACAAGGAAGAGGAGGAAGCGATCCTCTTCATCACAAGGACCTTTGTGATGACGTGAAGACAGAGAAGGGTGCCACCAAAATTGAATTTTATGTTTACGAGTGCAAAACGTGCAACAGAACATTCCCGTCTTTTCAGGCACTCGGTGGCCACCGGGCGAGTCACAAGAAGCCCAAGGTGGAGGACAAGAAATCCCCACCACCGTCGTTGCCGTTGCCGCCGCCGCCACCGTCTTCTTCGTCGCAACTGTTTAATTTTGAAGAAACGAAACAGAATCACATGAAGATTAGCCCTTCCGTTTCGCTTCAATTAGGGTGTGGAAACAATAGGGGTGGCTTAAATTTCCTTGGGAACAAGTCCAAGATTCACGAGTGTTCCATTTGTGGGTCAGAATTCACATCGGGGCAAGCATTGGGTGGTCACATGAGGAGGCATAGGTCATCTAACAACAATAATACTAATAATACCAATAACGTTGTTACAACAACAACAACAACTTCTGACGGTGCCGTTGAGGTTAAGCCTCGGAATGTTCTAGAATTAGATCTCAACCTGCCGGCGCCGGAGGACGATCTCCGGGACTCGAAGTTTCAGTTTCCGGGGAATCAGAATTCCATGATGCTGTCGGCTGCTCCGGCTTTGGTGGGATGCCATTATTAG 930 0.5043 MLSEILDMEGMAAEELVSCNNDPTNIAKGKRTKRRLRPLSPCVVTAVTATAAAAAMTSSCSSASGGGGGSFSSITLEEEEEDMANCLILLAQGRGGSDPLHHKDLCDDVKTEKGATKIEFYVYECKTCNRTFPSFQALGGHRASHKKPKVEDKKSPPPSLPLPPPPPSSSSQLFNFEETKQNHMKISPSVSLQLGCGNNRGGLNFLGNKSKIHECSICGSEFTSGQALGGHMRRHRSSNNNNTNNTNNVVTTTTTTSDGAVEVKPRNVLELDLNLPAPEDDLRDSKFQFPGNQNSMMLSAAPALVGCHY 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03323 309 SMART c2h2final6 123 145 IPR013087 -
Viun5g03323 309 SMART c2h2final6 213 235 IPR013087 -
Viun5g03323 309 MobiDBLite consensus disorder prediction 139 173 - -
Viun5g03323 309 Pfam C2H2-type zinc finger 122 148 - -
Viun5g03323 309 Pfam C2H2-type zinc finger 213 237 - -
Viun5g03323 309 ProSitePatterns Zinc finger C2H2 type domain signature. 125 145 IPR013087 -
Viun5g03323 309 ProSitePatterns Zinc finger C2H2 type domain signature. 215 235 IPR013087 -
Viun5g03323 309 SUPERFAMILY beta-beta-alpha zinc fingers 122 235 IPR036236 -
Viun5g03323 309 ProSiteProfiles Zinc finger C2H2 type domain profile. 213 240 IPR013087 -
Viun5g03323 309 Gene3D Classic Zinc Finger 120 235 - -
Viun5g03323 309 ProSiteProfiles Zinc finger C2H2 type domain profile. 123 150 IPR013087 -
Viun5g03323 309 MobiDBLite consensus disorder prediction 155 170 - -
Viun5g03323 309 PANTHER ZINC FINGER PROTEIN ZAT5 75 293 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03323 Viun-Chr5 43665271 43666504 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g03323 21 309 C2H2 Transcription Factor Family AT2G28200 41.584 5.24e-60 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Viun5g03323 zf-C2H2_6 2.3e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03323 - - gmx:100788646 395.201
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g03323 5 43665271 43666504 Viun5g03323 5 43665271 43666504 ECH
Viun5g03323 5 43665271 43666504 Viun1g02413 1 34583968 34585038 ECH
Viun1g02413 1 34583968 34585038 Viun5g03323 5 43665271 43666504 ECH
Viun7g01003 7 10339603 10340781 Viun5g03323 5 43665271 43666504 ECH