Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03322 ATGATTTCAAGGGTCACATCTAGCTTCCAAAATCATCTTCAGATGTTCCCTGAGCATGAAGAATTGGTGTCACCCTCTGTGGAATCTGGGTCAGCTTCACACTCCAGCACCCTCCTCTTCAATCTCTCTATTCTGAAGGACAAGGTGAGCGAGGTGCAGACCCTAGTGGGTGTTATTCTCTCCCCAAATCAAACCCTTCCCGAGTCAACTTCCATGGCCATATCCAGCATGAACTCCACAATCCAAGAAATCCTAGTCACTGCCTCATCAATGATGTTCGCCTGCCAACAGATGGCTCACACAACCCCTTCTCCAGGTATTAATAATAACACCACCACTACATGCACCAACAAACTGCACCACCTCAACAAGTTATTATTGCCTCACTCAAACGCTAATAACACAGCCATAGATATGAGTGAGGGTTGTTTATTTTCTAGCACCGAGTCAGAGACGCTGGACTGGTTTACTGAAAGCTATAACAACAACGATAATAGCAATAGCACTAAGGAAGATGATCCAGGCGTTGTGATTACTGAAAACAACATGATTATTAGGGAAGAACATGAACTTAACGAAGAAGGGTATAGAGGGGTTTCAAGAAACAGTGATATAATCGAATTGGATGCTGCGGATTTGTTGGCGAAGTACACGCACTATTGCCAGGTTTGTGGGAAAGGGTTCAAGCGTGATGCGAATTTGAGGATGCACATGAGGGCTCATGGGGATGAGTACAAGACCAATGCTGCATTGAGCAACCCAATTAAGAACAAGGGGAAGTTGGAAGGGGAAAGCGAGTTTTTGATGGGTGTGAAGCCAAAGAGATATTCGTGTCCTCAAGAAGGGTGTAGGTGGAACCAAAAGCACGCCAAGTTTCAGCCATTGAAGTCTATGATTTGTGCCAAGAATCATTACAAGAGAAGCCATTGCCCGAAAATGTATGTGTGCAAGAGATGCAACCAGAAACAGTTCTCTGTGCTCTCTGATCTTAGGACACATGAGAAACACTGCGGGGATCTGAAGTGGCAGTGCTCCTGTGGCACTTCCTTTTCTAGGAAAGACAAACTCATGGGCCATGTTGCTTTGTTCGTGGGACACCAACCACTTATCAACAACAACGTTGGTCTCTCGTCGTACTCTGCAAAATTGGAGCACCACACATTGCAAATGCAGATTGATGCTGCCTCAAGATGA 1194 0.4531 MISRVTSSFQNHLQMFPEHEELVSPSVESGSASHSSTLLFNLSILKDKVSEVQTLVGVILSPNQTLPESTSMAISSMNSTIQEILVTASSMMFACQQMAHTTPSPGINNNTTTTCTNKLHHLNKLLLPHSNANNTAIDMSEGCLFSSTESETLDWFTESYNNNDNSNSTKEDDPGVVITENNMIIREEHELNEEGYRGVSRNSDIIELDAADLLAKYTHYCQVCGKGFKRDANLRMHMRAHGDEYKTNAALSNPIKNKGKLEGESEFLMGVKPKRYSCPQEGCRWNQKHAKFQPLKSMICAKNHYKRSHCPKMYVCKRCNQKQFSVLSDLRTHEKHCGDLKWQCSCGTSFSRKDKLMGHVALFVGHQPLINNNVGLSSYSAKLEHHTLQMQIDAASR 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03322 397 SUPERFAMILY beta-beta-alpha zinc fingers 217 244 IPR036236 -
Viun5g03322 397 ProSiteProfiles Zinc finger C2H2 type domain profile. 219 246 IPR013087 -
Viun5g03322 397 ProSitePatterns Zinc finger C2H2 type domain signature. 221 241 IPR013087 -
Viun5g03322 397 Gene3D Classic Zinc Finger 312 362 - -
Viun5g03322 397 FunFam Zinc finger protein 574 218 243 - -
Viun5g03322 397 Gene3D Classic Zinc Finger 209 272 - -
Viun5g03322 397 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 26 376 IPR044300 GO:0010044|GO:0010447
Viun5g03322 397 SMART c2h2final6 219 241 IPR013087 -
Viun5g03322 397 SMART c2h2final6 314 336 IPR013087 -
Viun5g03322 397 SMART c2h2final6 276 309 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03322 Viun-Chr5 43647724 43649205 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g03322 23 368 C2H2 Transcription Factor Family AT5G22890 47.123 1.60e-104 311
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Viun5g03322 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03322 - - var:108332918 573.163
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g03322 5 43647724 43649205 Viun5g03322 5 43647724 43649205 ECH