Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03319 ATGGCCAAGGGCACCGATTCCGACGAGTTCGTGTTGCTTTCTAGGGTCCGGACTGGTCTCAAGAGGGAGTTCGCGTTCGCAATGAAGGCCCAATCTGAGATCTGCGGCGCTTCTCTGGGCCGAACGCGGGCCAGCAAGAACCGGCCCGACCCTCCTGTTCAGGCGGCATCTGCCCGGAAACGGTCCAGGAAGACCGTCGAGCCCAAAACGTCGGAGGACGTCTTGAGCGAGGAAGAGGCTAAGAGCGACGTGGTGGATCTTCAGAGCGATGATGAGCCGAAGAATAATCATGCGGGAGAGTCAGAATCTGCGGCAATGTTGGTTTGTGAAGAGGAAGCGAAGAGTGGAGTGGCCATGGAAAATATTATCGGCGAAGAGGAGCCGAAGGTGTTGGAGACTGTTATCTGCGAAGAGGAATTGAAGGTGTTGGAAACTGTTATCAGCGAGGAGGAACCGAAGGCGTTAGAAATTGTCATGGGCGAAGAGGAACCGAAGGTGTTGGATAGTGGTGTTAATGAGGAGGAGCCTGTTGTGGCTGACACGTTGAAGGAAGAGGTTGTGGATGAGACGGCACAACCTCTTGGCGAAATTAATGAAGAATCGGAGAAGGGTGTTTCGGGAGATAAGGTTCCTAGTGGGGAAACACTTGTTGTGGAGAATGATGATGACAAGGGGAAGAAGAATAAGAAGAGAACGAAAAAGTGGTTGGAGAGGCTTCCGATTGTGAGAAGGTTTACGCGGTCGGCACTGAAGGAAAAACCCGAGGCAGCAAATGACGAGAAAAATGTTGGTGCTGTTGGACTTGATGATGTTATTAAGAGGGAATCAGAAACCGAGGCTTCGGTGTTAATGACCACTCCTATTTCGGGCAGATTTTCGAATTCTAGATTGAGGAAGTTTCCTACTAAGTTGAAGGATCTTCTGGCTACGGGCATTCTTGACGGATTGACAGTGAGGTACATGAAAGGATCAAAGGCTCGAAAAAATGGGGAAACAGGGCTTCAAGGAGTGATTCAGAACTCTGGGATTCTGTGTTTTTGTGAGAGTTGCATGGGGATTGAAGTGGTCACACCCACTGTGTTTGAGCTGCATGCTGGCAGTGCAAATAAACGTCCCCCAGAGTATATTTACATGGATTGTGGGAATGGTGGAAATAACCTCCGTGATGTCATGAATGCCTGCTGCGATTTGTCATTGGAGTCAATGGAGGAAGCCGTTCAAAAACTACTTGGTGGCTTCACTATGAACAAATCTTCCATCTGTTTTCACTGCAGAGGAGCATGCAAGGGTGTGTCAAAGCTCGTATGCGATGCTTGCATAGCAAGTCCCCCTCAAACAGCCACAACAAGTAGCAAAAAGATTTCATCACCAGTTCAACCAAGATCACCAGAGCCAGTAATGGTTCAAAAATCATTAGACAATGAGATGCAGCCAAATTCATTAGACAATGGGGTGCAGCCTGAGTCGCTAAATAATTGCGAGGTGCCAAACTCATTAACCAATGAGATGAAGCCAAATTTGCTACATAGTGGGTTGAAGCTTAATTCATCAAACAGTGGGATGAAGCCAAATTCATTAAAGAATGGAATGAAGCACAGTACATCTCGTGGTAAGAGTCAGGGAAGACTAACTAGGAAGGATCTGCGCTTGCATAAGTTGGTATTTGAAGCAGATGTTTTGCCAGATGGAACTGAAGTAGCCTACTATGCTCACGGACAGAAACTGCTGGTTGGTTACAAAAAGGGATATGGGATATTTTGTACCTGCTGCAACAGTGAGGTCAGTGCTTCTCAGTTTGAAGCTCATGCTGGGTGGGCATCTCGACGAAAGCCTTACCTGCACATTTACACATCTAATGGAATCTCACTCCATGAGTTGTCCATCTCTTTATCAAAAGACCGGAGATTTTCCAACAATGATAATGATGATCTCTGCATCATATGTGAAGATGGAGGGGATCTTTTGTGTTGTGATGGATGCCCTAGAGCTTTTCACATAGACTGTGTCCCTTTGCCATGCATTCCCAGTGGTACTTGGTATTGTAAGTATTGCCAGAATGTTTTCCAGAAAGATAGGCAGGGGCAACATAATGTGAATGCTCTGGCAGCTGGAAGGATTGAAGGCACTGATATTTTGGAACAAATGAACCCAAGATGTATTCGTGTTGTCAGAACTGTAGAAGTTGACCATGGTGGATGTGCCTTGTGCAGTCGTCACAATTTCAGTAAAAGCTTTGGTCCTCGGACAGTAATTATTTGTGATCAGTGTGAGAAAGAATATCATGTTGGCTGCTTGAAGGATCATAACATGCAGAACCTTGAGGAATTGCCTGAGGGGAATTGGTTTTGTGGCACATCTTGCAATCAAATCCATTCTGCTCTGGCGGATTTGGCAGCTTGTGGGGAAAAGAGTGTCCCAGATTCTCTTCTAAGTTTGATTAAAAAGAAGCACGAAGAGAAAAATGTAGACATTCGAGGTGACCTTGATGTTAAATGGAGGGTTATAAATTGGAAACTAGATGATTCTGTTGAAAATAGGAAAAGGCTTTCAAAGGCTGTTGCTATCTTCCATGAAAGGTTTGATCCTATAGTTGATTCAACATCTGGCCGAGATTTCATTCCGACAATGTTGTTTGGAAGGAACATTCGAGGTCAAGATTTTAGTGGGATGTACTGTGCAGTGCTTACTGTCAATGGAGATATTGTTTGCGCTGGAGTATTTCGTGTCTTTGGATCAGAAATTGCTGAGCTTCCATTGGTGGCAACTACTTCTGATCAACAAGGACAGGGTTATTTTCAGTGTCTATTTTCTTGTATTGAGACATTACTTGGTTCTTTGAATGTGAAGAACCTTGTGCTACCAGCTGCCGATGAAGCTGAATCGATATGGACCGGTAAATTTGGGTTCACAAAGCTAGCTCAAGATGAGATAAACAAGTATAAGAAATTTTATCGCATGATGATATTTCAAGGGACCTCGGTGTTACATAAGCCTGTTCCTGCACTCTGA 3009 0.451 MAKGTDSDEFVLLSRVRTGLKREFAFAMKAQSEICGASLGRTRASKNRPDPPVQAASARKRSRKTVEPKTSEDVLSEEEAKSDVVDLQSDDEPKNNHAGESESAAMLVCEEEAKSGVAMENIIGEEEPKVLETVICEEELKVLETVISEEEPKALEIVMGEEEPKVLDSGVNEEEPVVADTLKEEVVDETAQPLGEINEESEKGVSGDKVPSGETLVVENDDDKGKKNKKRTKKWLERLPIVRRFTRSALKEKPEAANDEKNVGAVGLDDVIKRESETEASVLMTTPISGRFSNSRLRKFPTKLKDLLATGILDGLTVRYMKGSKARKNGETGLQGVIQNSGILCFCESCMGIEVVTPTVFELHAGSANKRPPEYIYMDCGNGGNNLRDVMNACCDLSLESMEEAVQKLLGGFTMNKSSICFHCRGACKGVSKLVCDACIASPPQTATTSSKKISSPVQPRSPEPVMVQKSLDNEMQPNSLDNGVQPESLNNCEVPNSLTNEMKPNLLHSGLKLNSSNSGMKPNSLKNGMKHSTSRGKSQGRLTRKDLRLHKLVFEADVLPDGTEVAYYAHGQKLLVGYKKGYGIFCTCCNSEVSASQFEAHAGWASRRKPYLHIYTSNGISLHELSISLSKDRRFSNNDNDDLCIICEDGGDLLCCDGCPRAFHIDCVPLPCIPSGTWYCKYCQNVFQKDRQGQHNVNALAAGRIEGTDILEQMNPRCIRVVRTVEVDHGGCALCSRHNFSKSFGPRTVIICDQCEKEYHVGCLKDHNMQNLEELPEGNWFCGTSCNQIHSALADLAACGEKSVPDSLLSLIKKKHEEKNVDIRGDLDVKWRVINWKLDDSVENRKRLSKAVAIFHERFDPIVDSTSGRDFIPTMLFGRNIRGQDFSGMYCAVLTVNGDIVCAGVFRVFGSEIAELPLVATTSDQQGQGYFQCLFSCIETLLGSLNVKNLVLPAADEAESIWTGKFGFTKLAQDEINKYKKFYRMMIFQGTSVLHKPVPAL 1002
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03319 1002 MobiDBLite consensus disorder prediction 38 104 - -
Viun5g03319 1002 Pfam Tify domain binding domain 578 626 IPR032308 -
Viun5g03319 1002 Pfam Tify domain binding domain 336 394 IPR032308 -
Viun5g03319 1002 MobiDBLite consensus disorder prediction 60 98 - -
Viun5g03319 1002 MobiDBLite consensus disorder prediction 191 230 - -
Viun5g03319 1002 ProSitePatterns Zinc finger PHD-type signature. 645 684 IPR019786 -
Viun5g03319 1002 SMART PHD_3 644 685 IPR001965 -
Viun5g03319 1002 SMART PHD_3 732 788 IPR001965 -
Viun5g03319 1002 PANTHER AUTOIMMUNE REGULATOR 101 999 - -
Viun5g03319 1002 MobiDBLite consensus disorder prediction 514 537 - -
Viun5g03319 1002 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 727 790 IPR013083 -
Viun5g03319 1002 MobiDBLite consensus disorder prediction 444 458 - -
Viun5g03319 1002 Gene3D - 828 997 - -
Viun5g03319 1002 FunFam Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain 631 708 - -
Viun5g03319 1002 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 636 702 IPR013083 -
Viun5g03319 1002 SUPERFAMILY FYVE/PHD zinc finger 726 784 IPR011011 -
Viun5g03319 1002 ProSiteProfiles Zinc finger PHD-type profile. 642 687 IPR019787 -
Viun5g03319 1002 CDD PHD1_AIRE 644 684 - -
Viun5g03319 1002 FunFam PHD finger family protein 829 998 - -
Viun5g03319 1002 MobiDBLite consensus disorder prediction 444 464 - -
Viun5g03319 1002 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 888 972 IPR016181 -
Viun5g03319 1002 MobiDBLite consensus disorder prediction 514 543 - -
Viun5g03319 1002 SUPERFAMILY FYVE/PHD zinc finger 632 686 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03319 Viun-Chr5 43625042 43632226 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g03319 260 999 PHD Transcription Factor Family AT2G36720 44.837 0.0 642
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03319 - - var:108333944 1733.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g03319 5 43625042 43632226 Viun5g03319 5 43625042 43632226 ECH
Viun5g03319 5 43625042 43632226 Viun11g01828 11 34346689 34352633 PCT