Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03318 ATGGCTGTTGCGGGTGTGCATACTGTCACTGCGCTCGAATCTACTTTCCTGAGGGAATCCCTTTCTCAGTCATCTGGGAGGGAAGGAGATGGAGGGAGGGGAGGCACCCGGTCGTCTTCGGTCTTGCAAATGTGGAGAGAGATTGAGGATGAGCAGGCAGTAAGACCAGTTCAAGGAAGACCTGGGGAGGTTTTACTTCAACAAACGAGTGATGAGTTGGTTGTGGACTCCTCGCAGGAAAATATGCCATATAGCAACCAGAGAGAAGGACATGTGATAGAGGATGCAGGTTTGGGTGAGAATGATTCTGAGACCTGGTCACAAAGTCAGAATGAGTTCCATGACGAACAAGAGGAATTGAACAATTCTAACCACGAAAACTCCTCTGATTTTGGAGAAGTTGAAAGGGAAAGAGTAAGGCAAATATTCAGGGAGTGGATGAATAGTGGTTCTAGGGATCGTGCATCGAACAATTCCCAAGGAAACAGGGGGGAGTGGCGCGGGGAAATTGAGCAGGAAAGGTGCGGAGAAACTGATCAGGAAAGGGCGAGTATCATAAGGGAGTGGGTGCAGACGAGTGGCCAGCAGAGAGGTGCTTCTTCTGGGGAAAATAGGGAAGAACAATCTTCTGAAACTGGTACCCAAATTGAATGTGTTCGTGATGGATTTGTTTATCAGAACGAGGGTCAAACTGAGCATACACGGAGGGGAATCCGTAAACTATGTGGCCGGCAGGTGCTGCTTGATATGCTTAAGAAGGCCCAGATGGAAAGGCAAAGAGAAGTACAGGAATTGTTGGACCATCGGGTTGTATCTCATTTCCCCCATCGTAATCGTATTCAGGCCTTGCTTAGAGGCAGGTTCTTGAGAAATGATAGATCGAATGGCAATAACAGGTCCACTTCCATCGCAGAAAGTGAATTAGGCTTATTGAGACAGAAGCAGACTGTATCAGGTCTAAGAGAAGGATTCTTTTTCAGAAAGGACAGTTTTGGTTGCAGTCAAGCAACCAGTAACCTATCTGATACCTCTTCCGAGAGTGATATTGATGTTAATGCAATTGAACAAACTGGAGCTAGCAGTTCACAAGCAGTCCCAACTGTGCATTCTGAACAATCTCGGCCTATTAACAGTGGAAGTGACGGACTTGAGATACCATGTGATCAGATCTGTTCACAAGGAACCCCTTGTGAGAAATTAGACTGGCAAGGCTCTGCCGTTCATGTAGAAACAATAGATCGGGAATCATCTTCTAGTATGAGAGTTGAAGGAGGAGATGGCACTGGACAAACTGTTGCTATGATGCCAGCTGAAGATTCTTCTAATGACCTTTCCCAACAAAACTTGCAAATTGAAGATACAGAGGATGACAGTATGCAAGAGTTAAGCGAGGTACATACTGAGCAATCTCAGTGGGGAGATATAACTAATGATGAAAGCAATTTATCAAATCAGGATGATCGTGTATATAGCAATATCGTCGGTGATGTAGATTTGATTGAATCTATTGCTCTGGAAGTAGAAGAACAGGAAGAAGTTATTATTGAAAATGACAGAAGTGACTGGCATCAAAGTGTGGATGATCATCAGCTCAGTAACACAACAAATGAATGGCCCCAAAACATATTGGGTAGCGAAGATGGAGAAAATTCTCGTATGCAAGAGCAAGAAGCCCCTGAAGCGTGGCAAGAGGATGGTGGCTTTCAAGAGGCTGTGGAAATTTGGTTAGGAGGACCTTCTGATAATGAAGTAGCTCCAGTTGGTAGAATTCATGGGTTTTATTTTCCCGAAGATGACAATGTGTATAGTGTTGAACTCAGGGAATTGCTAAGTAGGAGAAGTGTCTCAAACCTCCTTCGCAGCAGTTTTCGTGAAAGTCTTGACCAGTTGATACAGTCGTATGTTGAAAGGCAAGGTCACGCTAACGTTGAATGGGAGCTGCAAGAAACAACCCCTTCTTCTCCCATGGCAGAACAAGACTCTGGACAAGAGACTAGGGATCCAGTTGTTGGTCCTCAGGGTACTGTTAATAGCTCACTTGACCACCGTCCCTTGCCACCAACACCTCCGCCTCAGCCTTTGTGGGATCGGCACTCTCGCCATGACAATTGGTCACAGAGTGACATAAATAATCAGCGCCTAGGAATTGTGCGTTCATTTGCGGGACATAACTGCTTTTCTTTAGCTGATGAATGGGATATTGTTAATGACTTGAGAATTGACATGGTTAGGCTACAGCAAAGGATGAATAACATGCAAAGAATGCTGGAGGCCTGTATGGATATGCAACTTGAGTTACAACGCTCAATAAGACAAGAAGTCTCTGCAGCCTTAAATCGCTCAACTGATTCATCAGGAACGCATGACCGTGTTTCACCTGACGATAAATCTAAATGGGAATGTGTGAGGAAAGGACTTTGTTGTATATGTTGTGAAAGCAATATTGATTCTTTGTTGTACAGATGTGGGCACATGTGCACATGTTCAAAATGTGCAAATGATTTGCACCAAAGTAGAAGAAAGTGTCCAATGTGTCAAGCACCAGTGGTGGAAGTGATACGTGCTTATTCTATACAATAG 2580 0.445 MAVAGVHTVTALESTFLRESLSQSSGREGDGGRGGTRSSSVLQMWREIEDEQAVRPVQGRPGEVLLQQTSDELVVDSSQENMPYSNQREGHVIEDAGLGENDSETWSQSQNEFHDEQEELNNSNHENSSDFGEVERERVRQIFREWMNSGSRDRASNNSQGNRGEWRGEIEQERCGETDQERASIIREWVQTSGQQRGASSGENREEQSSETGTQIECVRDGFVYQNEGQTEHTRRGIRKLCGRQVLLDMLKKAQMERQREVQELLDHRVVSHFPHRNRIQALLRGRFLRNDRSNGNNRSTSIAESELGLLRQKQTVSGLREGFFFRKDSFGCSQATSNLSDTSSESDIDVNAIEQTGASSSQAVPTVHSEQSRPINSGSDGLEIPCDQICSQGTPCEKLDWQGSAVHVETIDRESSSSMRVEGGDGTGQTVAMMPAEDSSNDLSQQNLQIEDTEDDSMQELSEVHTEQSQWGDITNDESNLSNQDDRVYSNIVGDVDLIESIALEVEEQEEVIIENDRSDWHQSVDDHQLSNTTNEWPQNILGSEDGENSRMQEQEAPEAWQEDGGFQEAVEIWLGGPSDNEVAPVGRIHGFYFPEDDNVYSVELRELLSRRSVSNLLRSSFRESLDQLIQSYVERQGHANVEWELQETTPSSPMAEQDSGQETRDPVVGPQGTVNSSLDHRPLPPTPPPQPLWDRHSRHDNWSQSDINNQRLGIVRSFAGHNCFSLADEWDIVNDLRIDMVRLQQRMNNMQRMLEACMDMQLELQRSIRQEVSAALNRSTDSSGTHDRVSPDDKSKWECVRKGLCCICCESNIDSLLYRCGHMCTCSKCANDLHQSRRKCPMCQAPVVEVIRAYSIQ 859
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03318 859 MobiDBLite consensus disorder prediction 649 703 - -
Viun5g03318 859 SUPERFAMILY RING/U-box 806 852 - -
Viun5g03318 859 MobiDBLite consensus disorder prediction 531 549 - -
Viun5g03318 859 Coils Coil 735 762 - -
Viun5g03318 859 Pfam Zinc finger, C3HC4 type (RING finger) 804 851 - -
Viun5g03318 859 MobiDBLite consensus disorder prediction 70 86 - -
Viun5g03318 859 MobiDBLite consensus disorder prediction 531 550 - -
Viun5g03318 859 Coils Coil 437 457 - -
Viun5g03318 859 MobiDBLite consensus disorder prediction 15 29 - -
Viun5g03318 859 MobiDBLite consensus disorder prediction 109 134 - -
Viun5g03318 859 MobiDBLite consensus disorder prediction 649 682 - -
Viun5g03318 859 MobiDBLite consensus disorder prediction 150 165 - -
Viun5g03318 859 MobiDBLite consensus disorder prediction 411 445 - -
Viun5g03318 859 ProSiteProfiles Zinc finger RING-type profile. 807 846 IPR001841 -
Viun5g03318 859 MobiDBLite consensus disorder prediction 185 215 - -
Viun5g03318 859 MobiDBLite consensus disorder prediction 150 215 - -
Viun5g03318 859 MobiDBLite consensus disorder prediction 358 379 - -
Viun5g03318 859 CDD mRING-HC-C3HC5_NEU1 807 856 - -
Viun5g03318 859 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 784 857 IPR013083 -
Viun5g03318 859 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 439 859 - -
Viun5g03318 859 MobiDBLite consensus disorder prediction 166 184 - -
Viun5g03318 859 MobiDBLite consensus disorder prediction 15 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03318 Viun-Chr5 43606433 43611275 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g03318 807 853 C3H Transcription Factor Family AT3G06140 38.298 3.92e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03318 - - gmx:100804887 1335.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g03318 5 43606433 43611275 Viun5g03318 5 43606433 43611275 ECH