Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03317 ATGGCTGTTGCGGGTGTGCATACTGTCACTGCGCTCGAATCTACTTTCCTGAGGGAATCCCTTTCTCAGTCATCTGGGAGGGAAGGAGATGGAGGGAGGGGAGGCACCCGGTCGTCTTCGGTCTTGCAAATGTGGAGAGAGATTGAGGATGAGCAGGCAGTAAGACCAGTTCAAGGAAGACCTGGGGAGGTTTTACTTCAACAAACGAGTGATGAGTTGGTTGTGGACTCCTCGCAGGAAAATATGCCATATAGCAACCAGAGAGAAGGACATGTGATAGAGGATGCAGGTTTGGGTGAGAATGATTCTGAGACCTGGTCACAAAGTCAGAATGAGTTCCATGACGAACAAGAGGAATTGAACAATTCTAACCACGAAAACTCCTCTGATTTTGGAGAAGTTGAAAGGGAAAGAGTAAGGCAAATATTCAGGGAGTGGATGAATAGTGGTTCTAGGGATCGTGCATCGAACAATTCCCAAGGAAACAGGGGGGAGTGGCGCGGGGAAATTGAGCAGGAAAGGTGCGGAGAAACTGATCAGGAAAGGGCGAGTATCATAAGGGAGTGGGTGCAGACGAGTGGCCAGCAGAGAGGTGCTTCTTCTGGGGAAAATAGGGAAGAACAATCTTCTGAAACTGGTACCCAAATTGAATGTGTTCGTGATGGATTTGTTTATCAGAACGAGGGTCAAACTGAGCATACACGGAGGGGAATCCGTAAACTATGTGGCCGGCAGGTGCTGCTTGATATGCTTAAGAAGGCCCAGATGGAAAGGCAAAGAGAAGTACAGGAATTGTTGGACCATCGGGTTGTATCTCATTTCCCCCATCGTAATCGTATTCAGGCCTTGCTTAGAGGCAGGTTCTTGAGAAATGATAGATCGAATGGCAATAACAGGTCCACTTCCATCGCAGAAAGTGAATTAGGCTTATTGAGACAGAAGCAGACTGTATCAGGTCTAAGAGAAGGATTCTTTTTCAGAAAGGACAGTTTTGGTTGCAGTCAAGCAACCAGTAACCTATCTGATACCTCTTCCGAGAGTGATATTGATGTTAATGCAATTGAACAAACTGGAGCTAGCAGTTCACAAGCAGTCCCAACTGTGCATTCTGAACAATCTCGGCCTATTAACAGTGGAAGTGACGGACTTGAGATACCATGTGATCAGATCTGTTCACAAGGAACCCCTTGTGAGAAATTAGACTGGCAAGGCTCTGCCGTTCATGTAGAAACAATAGATCGGGAATCATCTTCTAGTATGAGAGTTGAAGGAGGAGATGGCACTGGACAAACTGTTGCTATGATGCCAGCTGAAGATTCTTCTAATGACCTTTCCCAACAAAACTTGCAAATTGAAGATACAGAGGATGACAGTATGCAAGAGTTAAGCGAGGTACATACTGAGCAATCTCAGTGGGGAGATATAACTAATGATGAAAGCAATTTATCAAATCAGGATGATCGTGTATATAGCAATATCGTCGGTGATGTAGATTTGATTGAATCTATTGCTCTGGAAGTAGAAGAACAGGAAGAAGTTATTATTGAAAATGACAGAAGTGACTGGCATCAAAGTGTGGATGATCATCAGCTCAGTAACACAACAAATGAATGGCCCCAAAACATATTGGGTAGCGAAGATGGAGAAAATTCTCGTATGCAAGAGCAAGAAGCCCCTGAAGCGTGGCAAGAGGATGGTGGCTTTCAAGAGGCTGTGGAAATTTGGTTAGGAGGACCTTCTGATAATGAAGTAGCTCCAGTTGGTAGAATTCATGGGTTTTATTTTCCCGAAGATGACAATGTGTATAGTGTTGAACTCAGGGAATTGCTAAGTAGGAGAAGTGTCTCAAACCTCCTTCGCAGCAGTTTTCGTGAAAGTCTTGACCAGTTGATACAGTCGTATGTTGAAAGGCAAGGTCACGCTAACGTTGAATGGGAGCTGCAAGAAACAACCCCTTCTTCTCCCATGGCAGAACAAGACTCTGGACAAGAGACTAGGGATCCAGTTGTTGGTCCTCAGGGTACTGTTAATAGCTCACTTGACCACCGTCCCTTGCCACCAACACCTCCGCCTCAGCCTTTGTGGGATCGGCACTCTCGCCATGACAATTGGTCACAGAGTGACATAAATAATCAGCGCCTAGGAATTGAATGGGATATTGTTAATGACTTGAGAATTGACATGGTTAGGCTACAGCAAAGGATGAATAACATGCAAAGAATGCTGGAGGCCTGTATGGATATGCAACTTGAGTTACAACGCTCAATAAGACAAGAAGTCTCTGCAGCCTTAAATCGCTCAACTGATTCATCAGGAACGCATGACCGTGTTTCACCTGACGATAAATCTAAATGGGAATGTGTGAGGAAAGGACTTTGTTGTATATGTTGTGAAAGCAATATTGATTCTTTGTTGTACAGATGTGGGCACATGTGCACATGTTCAAAATGTGCAAATGATTTGCACCAAAGTAGAAGAAAGTGTCCAATGTGTCAAGCACCAGTGGTGGAAGTGATACGTGCTTATTCTATACAATAG 2538 0.4452 MAVAGVHTVTALESTFLRESLSQSSGREGDGGRGGTRSSSVLQMWREIEDEQAVRPVQGRPGEVLLQQTSDELVVDSSQENMPYSNQREGHVIEDAGLGENDSETWSQSQNEFHDEQEELNNSNHENSSDFGEVERERVRQIFREWMNSGSRDRASNNSQGNRGEWRGEIEQERCGETDQERASIIREWVQTSGQQRGASSGENREEQSSETGTQIECVRDGFVYQNEGQTEHTRRGIRKLCGRQVLLDMLKKAQMERQREVQELLDHRVVSHFPHRNRIQALLRGRFLRNDRSNGNNRSTSIAESELGLLRQKQTVSGLREGFFFRKDSFGCSQATSNLSDTSSESDIDVNAIEQTGASSSQAVPTVHSEQSRPINSGSDGLEIPCDQICSQGTPCEKLDWQGSAVHVETIDRESSSSMRVEGGDGTGQTVAMMPAEDSSNDLSQQNLQIEDTEDDSMQELSEVHTEQSQWGDITNDESNLSNQDDRVYSNIVGDVDLIESIALEVEEQEEVIIENDRSDWHQSVDDHQLSNTTNEWPQNILGSEDGENSRMQEQEAPEAWQEDGGFQEAVEIWLGGPSDNEVAPVGRIHGFYFPEDDNVYSVELRELLSRRSVSNLLRSSFRESLDQLIQSYVERQGHANVEWELQETTPSSPMAEQDSGQETRDPVVGPQGTVNSSLDHRPLPPTPPPQPLWDRHSRHDNWSQSDINNQRLGIEWDIVNDLRIDMVRLQQRMNNMQRMLEACMDMQLELQRSIRQEVSAALNRSTDSSGTHDRVSPDDKSKWECVRKGLCCICCESNIDSLLYRCGHMCTCSKCANDLHQSRRKCPMCQAPVVEVIRAYSIQ 845
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03317 845 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 770 843 IPR013083 -
Viun5g03317 845 ProSiteProfiles Zinc finger RING-type profile. 793 832 IPR001841 -
Viun5g03317 845 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 439 845 - -
Viun5g03317 845 MobiDBLite consensus disorder prediction 649 703 - -
Viun5g03317 845 MobiDBLite consensus disorder prediction 531 549 - -
Viun5g03317 845 MobiDBLite consensus disorder prediction 70 86 - -
Viun5g03317 845 MobiDBLite consensus disorder prediction 531 550 - -
Viun5g03317 845 Pfam Zinc finger, C3HC4 type (RING finger) 790 837 - -
Viun5g03317 845 Coils Coil 437 457 - -
Viun5g03317 845 CDD mRING-HC-C3HC5_NEU1 793 842 - -
Viun5g03317 845 MobiDBLite consensus disorder prediction 16 134 - -
Viun5g03317 845 SUPERFAMILY RING/U-box 792 838 - -
Viun5g03317 845 MobiDBLite consensus disorder prediction 150 165 - -
Viun5g03317 845 MobiDBLite consensus disorder prediction 109 134 - -
Viun5g03317 845 MobiDBLite consensus disorder prediction 649 682 - -
Viun5g03317 845 MobiDBLite consensus disorder prediction 411 445 - -
Viun5g03317 845 Coils Coil 721 748 - -
Viun5g03317 845 MobiDBLite consensus disorder prediction 185 215 - -
Viun5g03317 845 MobiDBLite consensus disorder prediction 150 215 - -
Viun5g03317 845 MobiDBLite consensus disorder prediction 358 379 - -
Viun5g03317 845 MobiDBLite consensus disorder prediction 166 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03317 Viun-Chr5 43606433 43611275 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g03317 793 839 C3H Transcription Factor Family AT3G06140 38.298 4.30e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03317 - - gmx:100804887 1344.72