Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03288 ATGGAGCCTCCCGTTGTGAGATCCAGAGGTCGCCCACGTAAACGGAGAAGAGAAGAGGATGGAACTGTCGCCGGCGATCCGAAAGCGTTTCCTGAGGCGAAGAAGGCGCCTCCGGTTGCACTGGTTGGTCGATACGTGCTGAAAGAGTTCCGCGGGAACACGGTTCTTCTCGGCAAAGTCGTCCGCTACGAGAGCGGGTTGTACAGAGTCGTGTACGAGAGTGGCGGATTCGAGGATTTAGGTAGCAGCGCAATTCGTAGGATACTTCTCCTTGATAGCTATTTCGACGATGATTTAATTCGGAGGAAAGGCGAATTGGAGGAGTCGGTGTTGCCGAAGATTGCGGAGGAACAAGAGAGAGGTTCGCGCGAATTGCACGAGGATTTATCGGTTGAGAGCGAAGAAGAACGAGATGAAACGGACGACGAGTCGTGCAGTGAGGCTATGGATTTGAGTTCCGATTCCCAAACGCCGATACCATCTCCACCCACGCTGCCGCCTTCTTCTGGAACTATTGGCGTTCCGGAATCGTGCGTTTTGAATCTCCTTTCAGTGTACGGATTCTTGCGGTCGTTTAGCATTCGTCTGTTTCTCAGTCCTTTTACTTTAGACGAGTTTGTCGGTGCTTTGAACTGTAAAGTTTCGAACACGTTGCTTGATGCTATTCACATTTCGCTGATGCGTGTTTTGAGACGTCACCTTGAAAACATTTCACCAGATGGCTCGCGGCGTGCAACAAAATGCCTTAGGTGCATTGATTGGAGTCTGCTTGATGCTTTGACTTGGCCTGTTTTTACGTTTCAGTATTTAGCAATTTATGATTACACAAAGGGACCTGAGTGGAAAGGATTTTATGATGAAATCTTTTATGGCGAGTACTATTTATTGTCTGCTAGTAGGAAACTGATGATTTTGCAAATACTCTGTGATGATGTTCTGGCATCTGAGGAGTTTAAAGCTGAAATGAACATGCGTGAAGAATTAGAGGTTGGCATTGATTATGATAATGAAGATGATAGCCTTCCTACTGAAATTGGGCCAAGAAGAGTTCATCCAAGATATTCCAAAACTACTGCCTGCAAGGATAGTGAAACTAAGAAGTATGTTTCAGAATTGAATGCTGAGGATGCTGATGGAAATGGAGATGAATGCCGCTTATGTGGCATGGATGGAACTTTACTTTGTTGTGATGGTTGTCCTGCTGTCTATCATTCAAGGTGTATTGGTGTGATGAAGATGCATATACCGGATGGAGAATGGTATTGTCCAGAGTGCAAAATAAATATGATTGGGCCTTCTATTGCACGGGGAACATCACTTAAAGGGGCTGAAGTATTTGGAAAGGATTTGTATGGGCAAGTTTTCATGGGTACATGCGACCACTTACTGGTACTCGATGTCAACAGTGATAAATTTTGTCTTAAGTACTACAATCAGAATGACATTCCTGAAGTTCTCCGAGTCCTTTATGCATCTGAGCAACTTAGACCTATATATAATGGCATTTGCATGGCAATGTTAGAGTATTGGAAAATTCCAGAAAACTTCTTATCCATTTGTGTCACAAGTGTACCGCAAGTAAACTTAACAAATTCAAATACAGATATGAAACTTTCTCCCATGATTGAAGAAGAGAATGAAGCTCTAAGTTCGGTGAAGGCAGAATACAGTTCAACATTTTCAAATGGAAATTGTAGTGATAATTTGGAACCATCTCTTGATGCTTCTTTGGTTGCAAGTTCTGGTTCTGCTCCTGGAAGCAGGTACAATACAAGAACTACTGTGAATTTGAAGCTTTGTGAGGAAACTGCAATGAATTCGACATTTTCATTTGCTAACCATCAGTCCAATCCTAAGTTTGAAAATTCTGTTAACAAGTCAACTGCAGTCGGCCCCGCTAGGTGCACCTTTGTAAACAATCAATTTAATAATTATGGGCACACAAACGACTTAAGGCTGCCTATGAATTTGTCTTTGCAAACTAAAGGTGACCAATCTGGTTTTGGGAAGTGCAAAGGCAGTTTGACTAAGGATTTTATGTACACTGGTTGCTCCTATAAACCACAGTCATATATTAATTGCTATATGCATGGTGATTTTGCGGCATCTGCTGCTGCTAACCTGGCCGTTCTTTCTTCTGAGGATTCCAGATCAGAGGGTCTTGTGTCTGATAACCTGGGGAAAGCAACATCTGGAAACACTTATTTGCTTGCAAAAGCATTCTCCCAAACAGCTTCACGCTTCTTTTGGCCAAGTTCTGAAAAGAAGCTTGTAGAGGTTCCAAGAGAGAGGTGTGGCTGGTGCCTTTCTTGTAAAGCCCTTATTTCAAGCAAGAAAGGATGCATGTTAAATCATGCTGCTCTGAGTGCTACCAAAAATGCAATGAAAATCCTTTCTGGTCTTGCTCCTGTAAGGATTGGAGAAGGAATCATCCCTAGCATTGCAACTTATGTTATATATATGGAGGAAAGTTTACGTGGTTTAATAGTTGGGCCCTTTATAAGTGAATGTTACAGAAGGCATTGGCGTAAACAAGTGGAAAGAGCCACATCATTTAGTGATATAAAACCTCTTCTACTCAAACTCGAGGAGAATATTCGAACAATTGCTTTCTGTGGGGACTGGGTGAAGTTGATGGATGATTGGTTAGCTGAATTTTCTACATTCCAAAGTGCTGCTGTTACTCTTGGAACTACACAGAAACGTGCAACATGTGGGAGGCGTAAGAAACAGTTATCTATCAACAAAGTTACAGCTGGTGCTTGTCCTGAAAATTTTACATGGTGGCATGGCGGGAAATTTTCCAAATCTGTATTTCAGAAAGCTGTTTTGCCAAAATCCATGACCAGAAAAGCAGCTAGACAAGGTGGTTTGAGGAAAATTTCAGGTATATTGTATGCTGATGGCTCTGAGATTCCTAAAAGAAGCAGACAAGTTGTTTGGAGAGCAGCAGTTCAAATGAGTACGAATGCATCCCAGTTGGCCCTTCAGGTTCGATATCTAGATTTTCATGTCAGATGGAATGATCTGATTCGTCCAGAGCACAACCTCCTAGATGTGAAAGGTCAAGATAACGAAGCATCTGCGTTTAGGAATGCAAATATTCATGAAAAAAGAATTGTGGAGGGCAAAATTTTGTATAGAGTAGCCTTTGGAAGCCAAAAACATCTTCCTTCTCGGGTAATGAAACATGTTGAAATAGAGCGAGGTCCTGAAGGAAAGGAAAAATTCTGGTTTTCTGAAAAACGGATTCCTTTATATTTGGTAAAAGAGTATGAAATGCGTAATGGAAAAATGCTATCTGATAAAGAGTACATGTACATTACATCTCAGTTGCACAAAAGGCGGTTGAAAGCTACCTACAAGGACATTTTTTTTTACCTTACCTGCAAGAGAGACAAACTGGACATACTATCGTGCTCTGTTTGTCAGCTGGGTGTTTTAATTGGGAATGCTCTCAAGTGCAGTGCCTGTCAAGGTTATTGTCACACGGGTTGTTCAGTGAGTTCAACTGTCTCTACATGTGAAGAAGTTGAGTTCTTGGCCACATGCATACAATGTCATCATGCCAAATTACTTACTCAAAAAGAGTCTTGTAATGAGTCTCCGACTAGTCCCTTGCTCTTAGAAGGACAAGACCAAAGCACTTCAGCAGTTCTGAAGGGACCAGGGGCTAAATGTGATGGTCAAGAATTAATGTCTTCAAGGACAAAGAATAGTCGATCTGACACGAAAGGATTTGCTTCTGATTTCTCTTTGGAAACAAAAGGCCGTAGCAGAAATTGTTCTTGGGGTATTATATGGAAAAAGAAGAACAACGAAGATACAGGCTTTGATTTCAGGCTCAAGAACATTCTTCTAAAAGGAGGTTCAGGCCTGCCTCAATTGAAGCCTGTTTGTCGCTTGTGCCAAAAACCTTATAATTCTGATCTAATGTATATCTGTTGTGAAACATGTAAACATTGGTACCATGCTGAAGCTGTGGAACTTGAAGAGTCCAGACTGTTTGATGTGCTGGGCTTCAAATGTTGCAAGTGTCGCAGGATAAAGTCGCCTGTATGTCCTTTCTCTGATTTGAGTTACAGGACTCAAGATGATAAGAGATCTTCAAGGGCTTCAAAGAAAGATTACTTCTTGGGAGATTCTGATTCTGGTACACCTATTGACAGGAGGACATGTGAGCCTGCAACTCCTATCTGTCCTGCAGTGGATGTCTCTAGACAAGACAGTGATCATCTGCTGTTCTCCCTTTCAAGTGTTGAGCTGCTGCTTGCAGAACCCGAGTTAGATGCAAATGGTGTGGGCAGTACTGTCTCTGGGCCAGGAATTCCCAAGATATCTAAACGTGAGAGGGAGAATAATGGTTCTTGTAGAGGTAATCTTCACGCTGAGTTCTCAACCAGCAATGAGATGCTTTCCAAATCAGTAAAAGATTTATTCCCCTCTGTTGAAGATGCCTCTGCTAACTGCAGTCTTCCGAAGGACCCTGAAATTGTAAATTATAACGAGTTCGTGGATTTTGAACCTCATACCTTCTTCTCACTGACTGAACTGCTCCACTCTGATGAGAATATTCAATCTGAGGAAGCTGACGCTTCTCGGGTCTTATCGGGTTGTTTGAAAAATTCTTGTAGTGTTGCTGAAGGATGCGGGACTGTTGATTTAGCATCCAACTGTGAGCCTAAAAATTTGTTACAAGGAAATGTTGATAGTTGTCGGCAATGTTCACAAAAGGAACCGCTCCCTGATCTCCATTGTCAGATTTGTAGGATTTGGATTCACAGCCAGTGTTCACCTTGGGTGGAATCACCATCTCGGCTTTCAAGTTGGAGATGTGGTGATTGCCGGGAATGGCGATAG 4860 0.423 MEPPVVRSRGRPRKRRREEDGTVAGDPKAFPEAKKAPPVALVGRYVLKEFRGNTVLLGKVVRYESGLYRVVYESGGFEDLGSSAIRRILLLDSYFDDDLIRRKGELEESVLPKIAEEQERGSRELHEDLSVESEEERDETDDESCSEAMDLSSDSQTPIPSPPTLPPSSGTIGVPESCVLNLLSVYGFLRSFSIRLFLSPFTLDEFVGALNCKVSNTLLDAIHISLMRVLRRHLENISPDGSRRATKCLRCIDWSLLDALTWPVFTFQYLAIYDYTKGPEWKGFYDEIFYGEYYLLSASRKLMILQILCDDVLASEEFKAEMNMREELEVGIDYDNEDDSLPTEIGPRRVHPRYSKTTACKDSETKKYVSELNAEDADGNGDECRLCGMDGTLLCCDGCPAVYHSRCIGVMKMHIPDGEWYCPECKINMIGPSIARGTSLKGAEVFGKDLYGQVFMGTCDHLLVLDVNSDKFCLKYYNQNDIPEVLRVLYASEQLRPIYNGICMAMLEYWKIPENFLSICVTSVPQVNLTNSNTDMKLSPMIEEENEALSSVKAEYSSTFSNGNCSDNLEPSLDASLVASSGSAPGSRYNTRTTVNLKLCEETAMNSTFSFANHQSNPKFENSVNKSTAVGPARCTFVNNQFNNYGHTNDLRLPMNLSLQTKGDQSGFGKCKGSLTKDFMYTGCSYKPQSYINCYMHGDFAASAAANLAVLSSEDSRSEGLVSDNLGKATSGNTYLLAKAFSQTASRFFWPSSEKKLVEVPRERCGWCLSCKALISSKKGCMLNHAALSATKNAMKILSGLAPVRIGEGIIPSIATYVIYMEESLRGLIVGPFISECYRRHWRKQVERATSFSDIKPLLLKLEENIRTIAFCGDWVKLMDDWLAEFSTFQSAAVTLGTTQKRATCGRRKKQLSINKVTAGACPENFTWWHGGKFSKSVFQKAVLPKSMTRKAARQGGLRKISGILYADGSEIPKRSRQVVWRAAVQMSTNASQLALQVRYLDFHVRWNDLIRPEHNLLDVKGQDNEASAFRNANIHEKRIVEGKILYRVAFGSQKHLPSRVMKHVEIERGPEGKEKFWFSEKRIPLYLVKEYEMRNGKMLSDKEYMYITSQLHKRRLKATYKDIFFYLTCKRDKLDILSCSVCQLGVLIGNALKCSACQGYCHTGCSVSSTVSTCEEVEFLATCIQCHHAKLLTQKESCNESPTSPLLLEGQDQSTSAVLKGPGAKCDGQELMSSRTKNSRSDTKGFASDFSLETKGRSRNCSWGIIWKKKNNEDTGFDFRLKNILLKGGSGLPQLKPVCRLCQKPYNSDLMYICCETCKHWYHAEAVELEESRLFDVLGFKCCKCRRIKSPVCPFSDLSYRTQDDKRSSRASKKDYFLGDSDSGTPIDRRTCEPATPICPAVDVSRQDSDHLLFSLSSVELLLAEPELDANGVGSTVSGPGIPKISKRERENNGSCRGNLHAEFSTSNEMLSKSVKDLFPSVEDASANCSLPKDPEIVNYNEFVDFEPHTFFSLTELLHSDENIQSEEADASRVLSGCLKNSCSVAEGCGTVDLASNCEPKNLLQGNVDSCRQCSQKEPLPDLHCQICRIWIHSQCSPWVESPSRLSSWRCGDCREWR 1619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03288 1619 ProSitePatterns Zinc finger PHD-type signature. 384 425 IPR019786 -
Viun5g03288 1619 SMART testlast3 176 236 IPR018501 -
Viun5g03288 1619 MobiDBLite consensus disorder prediction 131 148 - -
Viun5g03288 1619 SMART PHD_3 383 426 IPR001965 -
Viun5g03288 1619 SMART PHD_3 1571 1616 IPR001965 -
Viun5g03288 1619 SMART PHD_3 1299 1347 IPR001965 -
Viun5g03288 1619 SMART PHD_3 1139 1188 IPR001965 -
Viun5g03288 1619 Pfam DDT domain 178 233 IPR018501 -
Viun5g03288 1619 PANTHER PHD FINGER FAMILY PROTEIN 115 1582 - -
Viun5g03288 1619 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 374 430 IPR013083 -
Viun5g03288 1619 ProSiteProfiles Zinc finger PHD-type profile. 381 428 IPR019787 -
Viun5g03288 1619 MobiDBLite consensus disorder prediction 1435 1459 - -
Viun5g03288 1619 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 291 323 IPR028942 -
Viun5g03288 1619 MobiDBLite consensus disorder prediction 113 130 - -
Viun5g03288 1619 SUPERFAMILY FYVE/PHD zinc finger 376 431 IPR011011 -
Viun5g03288 1619 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1290 1358 IPR013083 -
Viun5g03288 1619 ProSiteProfiles DDT domain profile. 176 236 IPR018501 -
Viun5g03288 1619 MobiDBLite consensus disorder prediction 113 169 - -
Viun5g03288 1619 SUPERFAMILY FYVE/PHD zinc finger 1298 1352 IPR011011 -
Viun5g03288 1619 Pfam PHD-finger 384 426 IPR019787 -
Viun5g03288 1619 MobiDBLite consensus disorder prediction 1 30 - -
Viun5g03288 1619 CDD PHD2_CHD_II 384 425 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03288 Viun-Chr5 43425310 43433205 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g03288 267 617 EF-hand Containing Proteins AT5G22760 39.687 1.62e-70 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Viun5g03288 DDT 4.2e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03288 - - gmx:100808614 2596.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g03288 5 43425310 43433205 Viun5g03288 5 43425310 43433205 ECH