Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03287 ATGGGAAGCAAGGTCAGCGACCACCACCTGTCCACCGTGAGATCCATCGTGGGTTCAGAATTCACCGACATGGATATCATCAGAGCACTCCACATGGCCAAAAACGACGTCAATGCGGCCATCAACATCATCTTGGACACTCACACCGCCCCAAGATTGAACCTTACGCGCCCCAACAATCACCGTTCAGTCTCTCCTCCAAAACCCTCCCCTTCCCCTCCTATAGTCACCAAGCCTAGCTCCAGTGAACAACGCATTGATAACAACAGTGATGATTGGTGGTTGGTGAGTTGCGGGGAAGTGACGGGTTTGTCTACGTGTAAAGGGAGAACTATAAATACAGATGAAGCTGTGATCTTCAAGTTTCCGACGAAGAAGTTATCCTCCCCCAGTACAGGAAAGGGCTTTGGACGGACTGCGGCATGTTCGGAGATTGTTCGGTTCTCTACTGAACAAGCTGGGGAGATTGGGAGAATACCAAATGAATGGGCTCGGTGTCTTTTGCCTCTGGTGCGAGATCAGAAGGTTAGGATTGAGGGGAAGTGTAAATTTGGTCCTCAAGTTTTGGGCATCATGGACTCCATTATTTTGTCAGTAAGTGTATTTATCAATAGTTCAATGTTTGGTAAGCATCACCAGGTTTCTCTCAAGGATGCTACCAACTCAACTGATGAATCTGTGTTTCATCCGCTGCCAACACTGTTTCGGTTGCTGGGTTTAAACCCTTTTAAAAAGGCAGAGTTAACTCCAGGCGATTTCTATTCCAATAAGCGTCCTCTCAGTGAAAGGGTAACTTTACCACGTGTCAAGTTTGAGGATCCTTCTCAAAATGGCAATGAGAATGACAATGAGGATTCAATTTCTGAAACTGAGGTTGAGAATATTGTTGGTGTTGGATCCAGTGCAGAGTTAGAGGAAATGGACCCCCCTGTTAATCTTCTGTGCGATCTACGACCTTATCAAAAGCAGGCACTTTATTGGATGATCCAGATGGAGAAGGGACAATGCATGGATGAGACTGCAACAACCCTCCATCCATGTTGGGAGGCATATCGCCTTGTTGACAAGAGGGAGCTTATCGTTTACTTGAATGCATTTTCTGGTGAAGCTACAATAGAATTTCCCAGCACCCTTCAAATGGCCAGAGGAGGAATTTTGGCAGATGCTATGGGGCTTGGAAAGACCATCATGACCATATCCCTTCTAGTTGCCCATTCAGGAAAGGGTGAAGCAGTAGGCAATCAACCCATGGCCAAGTCCTTTACTGAAGGTGGTGAAGTTAGTGATAATGTGCACACTTTTTCAAACATACCCAAGAAGGCAACCAAATTTTCTGGTTTTGATAAGCCAACAAAGCAAATGAACTCTCTAACAAGTGGTGGCAACTTGATAATATGTCCGATGACTCTTCTTGGGCAATGGAAGGCAGAGATTGAAACTCACGTGCACCCGGGATCTCTGTCTCTATATGTTCACTATGGACAAAGTAGGCCAAAAGATGCAAAAAGTCTCACTCAGAGTGATGTTGTAATTACTACATATGGAATTTTGGCCTCTGAATTTTCCAGTGAGAATGCAGATGATAATGGTGGACTCTTCTCAGTTCGGTGGTTTAGAGTTGTTCTTGATGAAGCACATACCATAAAATCTTCTAAAAGCCAAGTTTCTGTTGCAGCTGCTGCTCTAATTGCTGACAGACGTTGGTGTCTAACAGGCACCCCAATTCAGAACAGCCTCCAGGATATTTACAGTCTTCTGCGGTTTCTGAGAATAGAACCTTGGGGTCATTGGGCCTGGTGGAACAAACTTATTCAGAAACCATTTGAGGGTGGTGATGAAAGAGGGCTCAAGTTAGTTCAATCAATTTTGAAGCCAATTATGTTGAGGAGAACCAAACATAGTACAGATCGAGAGGGCAAGCCCATTTTAGTTCTGCCTCCAGCTGATATGCAGGTAGTTTACTGTGAACAGACAGAATCTGAACAGGACTTTTATGGAGCTCTATTCAAAAGATCTAAGGTAAAGTTTGATCAGTTTGTTGAGCAAGGACGTGTTCTTCATAATTACGCTTCAATATTGGAGTTACTTTTACGTCTTCGGCAATGTTGTGATCATCCATTTCTTGTAATGAGTCGAGGTGATACTCAAGATTTTGCGGATCTAAACAAACTAGCTAAGCGCTTCCTTAGAGGAACATATAATGCTTCGGATGGTGAAGTAAAAGAGGCACCTTCACGGGCTTATGTTCAAGAAGTTGTGGAGGAGCTACGTAAAGGGGAGCAAGGAGAGTGTCCAATATGCCTTGAAGCATTTGAAGATGCAGTGTTGACCCCTTGCGCTCACCGCTTATGCCGGGAATGCCTCTTGGCAAGTTTGCGAAATGCTACTTCTGGCCTATGTCCTGTTTGTAGGAAAGCAGTCAACAGGCAGGATCTAATCACTGCCCCTACTGAAAATCGGTTTCAGGTGGATATTGAGAAGAACTGGGTAGAGTCATGCAAGGTAACTGCTCTTTTGAGTGAACTTCAAAATCTTCGCTTGTCAGGCTCCAAAAGCATTGTTTTCAGCCAGTGGACTGCTTTTCTTGACCTCTTGCAGATCCCTTTCACTCGGAATAACATTTCATTTGTTCGTCTTGATGGGACTCTGAGTCAGCAGCAGCGGGAGAAAGTTATCAAGCAATTTTCAGAGGACAGCACGACTCTGGTTTTGTTAATGTCACTAAAAGCTGGTGGAATGGGTATAAATGTAACTGCTGCTTCTAATGCTTTTGTCATGGACCCATGGTGGAATCCAGCTGTTGAGGAACAAGCCGTTATGCGTATTCATCGCATTGGACAAACAAAGAAGGTGACCATTACACGGTTTATTGTGAAGGGGACCGTTGAGGAGAGAATGGAAGCAGTAAAAGCACGTAAACAACGAGTGATTTCTGGTGCCTTGACTGATCAAGAGTTTCGAAGTGCGCGCATTGAGGAGTTAAAGATGCTTTTTACTTAG 3000 0.4447 MGSKVSDHHLSTVRSIVGSEFTDMDIIRALHMAKNDVNAAINIILDTHTAPRLNLTRPNNHRSVSPPKPSPSPPIVTKPSSSEQRIDNNSDDWWLVSCGEVTGLSTCKGRTINTDEAVIFKFPTKKLSSPSTGKGFGRTAACSEIVRFSTEQAGEIGRIPNEWARCLLPLVRDQKVRIEGKCKFGPQVLGIMDSIILSVSVFINSSMFGKHHQVSLKDATNSTDESVFHPLPTLFRLLGLNPFKKAELTPGDFYSNKRPLSERVTLPRVKFEDPSQNGNENDNEDSISETEVENIVGVGSSAELEEMDPPVNLLCDLRPYQKQALYWMIQMEKGQCMDETATTLHPCWEAYRLVDKRELIVYLNAFSGEATIEFPSTLQMARGGILADAMGLGKTIMTISLLVAHSGKGEAVGNQPMAKSFTEGGEVSDNVHTFSNIPKKATKFSGFDKPTKQMNSLTSGGNLIICPMTLLGQWKAEIETHVHPGSLSLYVHYGQSRPKDAKSLTQSDVVITTYGILASEFSSENADDNGGLFSVRWFRVVLDEAHTIKSSKSQVSVAAAALIADRRWCLTGTPIQNSLQDIYSLLRFLRIEPWGHWAWWNKLIQKPFEGGDERGLKLVQSILKPIMLRRTKHSTDREGKPILVLPPADMQVVYCEQTESEQDFYGALFKRSKVKFDQFVEQGRVLHNYASILELLLRLRQCCDHPFLVMSRGDTQDFADLNKLAKRFLRGTYNASDGEVKEAPSRAYVQEVVEELRKGEQGECPICLEAFEDAVLTPCAHRLCRECLLASLRNATSGLCPVCRKAVNRQDLITAPTENRFQVDIEKNWVESCKVTALLSELQNLRLSGSKSIVFSQWTAFLDLLQIPFTRNNISFVRLDGTLSQQQREKVIKQFSEDSTTLVLLMSLKAGGMGINVTAASNAFVMDPWWNPAVEEQAVMRIHRIGQTKKVTITRFIVKGTVEERMEAVKARKQRVISGALTDQEFRSARIEELKMLFT 999
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03287 999 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 642 995 IPR027417 -
Viun5g03287 999 SMART helicmild6 863 946 IPR001650 -
Viun5g03287 999 SMART HIRAN_2 96 203 IPR014905 GO:0003676|GO:0008270|GO:0016818
Viun5g03287 999 Gene3D - 646 762 IPR027417 -
Viun5g03287 999 CDD DEXDc_SHPRH-like 317 630 - -
Viun5g03287 999 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 375 592 IPR014001 -
Viun5g03287 999 Pfam Helicase conserved C-terminal domain 835 946 IPR001650 -
Viun5g03287 999 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 763 812 IPR013083 -
Viun5g03287 999 MobiDBLite consensus disorder prediction 53 87 - -
Viun5g03287 999 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 87 999 - -
Viun5g03287 999 ProSitePatterns Zinc finger RING-type signature. 779 788 IPR017907 -
Viun5g03287 999 Pfam HIRAN domain 100 199 IPR014905 GO:0003676|GO:0008270|GO:0016818
Viun5g03287 999 Gene3D - 374 642 IPR038718 -
Viun5g03287 999 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 834 999 IPR001650 -
Viun5g03287 999 SMART ultradead3 313 614 IPR014001 -
Viun5g03287 999 FunFam DNA repair protein RAD5B 372 631 - -
Viun5g03287 999 Pfam SNF2-related domain 320 708 IPR000330 GO:0005524|GO:0140658
Viun5g03287 999 SMART ring_2 764 803 IPR001841 -
Viun5g03287 999 Pfam Zinc finger, C3HC4 type (RING finger) 761 808 - -
Viun5g03287 999 Gene3D - 813 997 IPR027417 -
Viun5g03287 999 ProSiteProfiles Zinc finger RING-type profile. 764 804 IPR001841 -
Viun5g03287 999 SUPERFAMILY RING/U-box 752 810 - -
Viun5g03287 999 CDD SF2_C_SNF 830 957 - -
Viun5g03287 999 MobiDBLite consensus disorder prediction 269 291 - -
Viun5g03287 999 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 304 630 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03287 Viun-Chr5 43410710 43419791 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g03287 1 999 RAD5 or RAD16-like Gene Family AT5G22750 69.059 0.0 1459
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Viun5g03287 SNF2_N 4.2e-82 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03287 K15505 - gmx:100794452 1755.73