LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun5g03287	ATGGGAAGCAAGGTCAGCGACCACCACCTGTCCACCGTGAGATCCATCGTGGGTTCAGAATTCACCGACATGGATATCATCAGAGCACTCCACATGGCCAAAAACGACGTCAATGCGGCCATCAACATCATCTTGGACACTCACACCGCCCCAAGATTGAACCTTACGCGCCCCAACAATCACCGTTCAGTCTCTCCTCCAAAACCCTCCCCTTCCCCTCCTATAGTCACCAAGCCTAGCTCCAGTGAACAACGCATTGATAACAACAGTGATGATTGGTGGTTGGTGAGTTGCGGGGAAGTGACGGGTTTGTCTACGTGTAAAGGGAGAACTATAAATACAGATGAAGCTGTGATCTTCAAGTTTCCGACGAAGAAGTTATCCTCCCCCAGTACAGGAAAGGGCTTTGGACGGACTGCGGCATGTTCGGAGATTGTTCGGTTCTCTACTGAACAAGCTGGGGAGATTGGGAGAATACCAAATGAATGGGCTCGGTGTCTTTTGCCTCTGGTGCGAGATCAGAAGGTTAGGATTGAGGGGAAGTGTAAATTTGGTCCTCAAGTTTTGGGCATCATGGACTCCATTATTTTGTCAGTAAGTGTATTTATCAATAGTTCAATGTTTGGTAAGCATCACCAGGTTTCTCTCAAGGATGCTACCAACTCAACTGATGAATCTGTGTTTCATCCGCTGCCAACACTGTTTCGGTTGCTGGGTTTAAACCCTTTTAAAAAGGCAGAGTTAACTCCAGGCGATTTCTATTCCAATAAGCGTCCTCTCAGTGAAAGGGTAACTTTACCACGTGTCAAGTTTGAGGATCCTTCTCAAAATGGCAATGAGAATGACAATGAGGATTCAATTTCTGAAACTGAGGTTGAGAATATTGTTGGTGTTGGATCCAGTGCAGAGTTAGAGGAAATGGACCCCCCTGTTAATCTTCTGTGCGATCTACGACCTTATCAAAAGCAGGCACTTTATTGGATGATCCAGATGGAGAAGGGACAATGCATGGATGAGACTGCAACAACCCTCCATCCATGTTGGGAGGCATATCGCCTTGTTGACAAGAGGGAGCTTATCGTTTACTTGAATGCATTTTCTGGTGAAGCTACAATAGAATTTCCCAGCACCCTTCAAATGGCCAGAGGAGGAATTTTGGCAGATGCTATGGGGCTTGGAAAGACCATCATGACCATATCCCTTCTAGTTGCCCATTCAGGAAAGGGTGAAGCAGTAGGCAATCAACCCATGGCCAAGTCCTTTACTGAAGGTGGTGAAGTTAGTGATAATGTGCACACTTTTTCAAACATACCCAAGAAGGCAACCAAATTTTCTGGTTTTGATAAGCCAACAAAGCAAATGAACTCTCTAACAAGTGGTGGCAACTTGATAATATGTCCGATGACTCTTCTTGGGCAATGGAAGGCAGAGATTGAAACTCACGTGCACCCGGGATCTCTGTCTCTATATGTTCACTATGGACAAAGTAGGCCAAAAGATGCAAAAAGTCTCACTCAGAGTGATGTTGTAATTACTACATATGGAATTTTGGCCTCTGAATTTTCCAGTGAGAATGCAGATGATAATGGTGGACTCTTCTCAGTTCGGTGGTTTAGAGTTGTTCTTGATGAAGCACATACCATAAAATCTTCTAAAAGCCAAGTTTCTGTTGCAGCTGCTGCTCTAATTGCTGACAGACGTTGGTGTCTAACAGGCACCCCAATTCAGAACAGCCTCCAGGATATTTACAGTCTTCTGCGGTTTCTGAGAATAGAACCTTGGGGTCATTGGGCCTGGTGGAACAAACTTATTCAGAAACCATTTGAGGGTGGTGATGAAAGAGGGCTCAAGTTAGTTCAATCAATTTTGAAGCCAATTATGTTGAGGAGAACCAAACATAGTACAGATCGAGAGGGCAAGCCCATTTTAGTTCTGCCTCCAGCTGATATGCAGGTAGTTTACTGTGAACAGACAGAATCTGAACAGGACTTTTATGGAGCTCTATTCAAAAGATCTAAGGTAAAGTTTGATCAGTTTGTTGAGCAAGGACGTGTTCTTCATAATTACGCTTCAATATTGGAGTTACTTTTACGTCTTCGGCAATGTTGTGATCATCCATTTCTTGTAATGAGTCGAGGTGATACTCAAGATTTTGCGGATCTAAACAAACTAGCTAAGCGCTTCCTTAGAGGAACATATAATGCTTCGGATGGTGAAGTAAAAGAGGCACCTTCACGGGCTTATGTTCAAGAAGTTGTGGAGGAGCTACGTAAAGGGGAGCAAGGAGAGTGTCCAATATGCCTTGAAGCATTTGAAGATGCAGTGTTGACCCCTTGCGCTCACCGCTTATGCCGGGAATGCCTCTTGGCAAGTTTGCGAAATGCTACTTCTGGCCTATGTCCTGTTTGTAGGAAAGCAGTCAACAGGCAGGATCTAATCACTGCCCCTACTGAAAATCGGTTTCAGGTGGATATTGAGAAGAACTGGGTAGAGTCATGCAAGGTAACTGCTCTTTTGAGTGAACTTCAAAATCTTCGCTTGTCAGGCTCCAAAAGCATTGTTTTCAGCCAGTGGACTGCTTTTCTTGACCTCTTGCAGATCCCTTTCACTCGGAATAACATTTCATTTGTTCGTCTTGATGGGACTCTGAGTCAGCAGCAGCGGGAGAAAGTTATCAAGCAATTTTCAGAGGACAGCACGACTCTGGTTTTGTTAATGTCACTAAAAGCTGGTGGAATGGGTATAAATGTAACTGCTGCTTCTAATGCTTTTGTCATGGACCCATGGTGGAATCCAGCTGTTGAGGAACAAGCCGTTATGCGTATTCATCGCATTGGACAAACAAAGAAGGTGACCATTACACGGTTTATTGTGAAGGGGACCGTTGAGGAGAGAATGGAAGCAGTAAAAGCACGTAAACAACGAGTGATTTCTGGTGCCTTGACTGATCAAGAGTTTCGAAGTGCGCGCATTGAGGAGTTAAAGATGCTTTTTACTTAG	3000	0.4447	MGSKVSDHHLSTVRSIVGSEFTDMDIIRALHMAKNDVNAAINIILDTHTAPRLNLTRPNNHRSVSPPKPSPSPPIVTKPSSSEQRIDNNSDDWWLVSCGEVTGLSTCKGRTINTDEAVIFKFPTKKLSSPSTGKGFGRTAACSEIVRFSTEQAGEIGRIPNEWARCLLPLVRDQKVRIEGKCKFGPQVLGIMDSIILSVSVFINSSMFGKHHQVSLKDATNSTDESVFHPLPTLFRLLGLNPFKKAELTPGDFYSNKRPLSERVTLPRVKFEDPSQNGNENDNEDSISETEVENIVGVGSSAELEEMDPPVNLLCDLRPYQKQALYWMIQMEKGQCMDETATTLHPCWEAYRLVDKRELIVYLNAFSGEATIEFPSTLQMARGGILADAMGLGKTIMTISLLVAHSGKGEAVGNQPMAKSFTEGGEVSDNVHTFSNIPKKATKFSGFDKPTKQMNSLTSGGNLIICPMTLLGQWKAEIETHVHPGSLSLYVHYGQSRPKDAKSLTQSDVVITTYGILASEFSSENADDNGGLFSVRWFRVVLDEAHTIKSSKSQVSVAAAALIADRRWCLTGTPIQNSLQDIYSLLRFLRIEPWGHWAWWNKLIQKPFEGGDERGLKLVQSILKPIMLRRTKHSTDREGKPILVLPPADMQVVYCEQTESEQDFYGALFKRSKVKFDQFVEQGRVLHNYASILELLLRLRQCCDHPFLVMSRGDTQDFADLNKLAKRFLRGTYNASDGEVKEAPSRAYVQEVVEELRKGEQGECPICLEAFEDAVLTPCAHRLCRECLLASLRNATSGLCPVCRKAVNRQDLITAPTENRFQVDIEKNWVESCKVTALLSELQNLRLSGSKSIVFSQWTAFLDLLQIPFTRNNISFVRLDGTLSQQQREKVIKQFSEDSTTLVLLMSLKAGGMGINVTAASNAFVMDPWWNPAVEEQAVMRIHRIGQTKKVTITRFIVKGTVEERMEAVKARKQRVISGALTDQEFRSARIEELKMLFT	999

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun5g03287	999	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	642	995	IPR027417	-
	Viun5g03287	999	SMART	helicmild6	863	946	IPR001650	-
	Viun5g03287	999	SMART	HIRAN_2	96	203	IPR014905	GO:0003676\|GO:0008270\|GO:0016818
	Viun5g03287	999	Gene3D	-	646	762	IPR027417	-
	Viun5g03287	999	CDD	DEXDc_SHPRH-like	317	630	-	-
	Viun5g03287	999	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	375	592	IPR014001	-
	Viun5g03287	999	Pfam	Helicase conserved C-terminal domain	835	946	IPR001650	-
	Viun5g03287	999	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	763	812	IPR013083	-
	Viun5g03287	999	MobiDBLite	consensus disorder prediction	53	87	-	-
	Viun5g03287	999	PANTHER	TRANSCRIPTION TERMINATION FACTOR 2-RELATED	87	999	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun5g03287	Viun-Chr5	43410710	43419791	Dispersed/Tandem

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun5g03287	1	999	RAD5 or RAD16-like Gene Family	AT5G22750	69.059	0.0	1459

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	SNF2	Viun5g03287		SNF2_N	4.2e-82	CL0023

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun5g03287	K15505		-	gmx:100794452	1755.73

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