Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03285 ATGGCCGAGAGAGATAAATCCAAAAACAAAATCCCATTGGCTCCAGATCGAATGAAGAAGAGGGGTAGACCTCCGTTGATGCTTAGGGGCAGAGGTCGAGGACGTCCTCCTAGTTCTTCCACAGTTCCACCAAATATAGTTTCTAACGTTGAGACTGGATCAAGCTTCGTCCCTTACCATCTCACTGTGAATCCTGGGGAGGACTTGCTAGAGAAGGTAGCAACATTTGCTAAAGCATCCTCTCTAACCGTTTGCGTACTTTCTGCTGTGGGTTCCATATCGAGGGTTGTTTTTCGCAAGCCCTGTCCTCCTCCAATTATTGATACTGTGACGTGGGAGGGGCGCTTTCAAATTTTGTCACTGTCTGGAAAATATACCTTTGTCCCTGGTCAGGAGGGTAAGTATGGAGAACATAACAGCTGGAACCTTGCAATATCTGATTTTAATGGAGCAGTTTTTGGAGGTTCTGTTGTGGGGCCAATAATTGTAGCTTCCCCTGTTGAGAAAATGATCAAACTAACTCTGAACCTCTTTGGTCTATTAGCTTATTCTTGCCACTTTCCAGCTGAAGAGTGCGGAAGAAATCAGAAGGCACGCATATTCCAGACTTAA 612 0.4526 MAERDKSKNKIPLAPDRMKKRGRPPLMLRGRGRGRPPSSSTVPPNIVSNVETGSSFVPYHLTVNPGEDLLEKVATFAKASSLTVCVLSAVGSISRVVFRKPCPPPIIDTVTWEGRFQILSLSGKYTFVPGQEGKYGEHNSWNLAISDFNGAVFGGSVVGPIIVASPVEKMIKLTLNLFGLLAYSCHFPAEECGRNQKARIFQT 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03285 203 Pfam Plants and Prokaryotes Conserved (PCC) domain 58 171 IPR005175 -
Viun5g03285 203 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 30 168 IPR039605 GO:0003680
Viun5g03285 203 Gene3D - 59 177 - -
Viun5g03285 203 CDD DUF296 58 171 IPR005175 -
Viun5g03285 203 ProSiteProfiles PPC domain profile profile. 53 195 IPR005175 -
Viun5g03285 203 SUPERFAMILY AF0104/ALDC/Ptd012-like 54 176 - -
Viun5g03285 203 MobiDBLite consensus disorder prediction 1 23 - -
Viun5g03285 203 MobiDBLite consensus disorder prediction 1 46 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03285 Viun-Chr5 43406854 43408983 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g03285 33 171 AT-hook Motif Nuclear Localized (AHL) Family AT2G33620 40.288 1.86e-22 91.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03285 - - vun:114184758 380.948