Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03268 ATGGAGTTTTGGGGTGCTGAGGTTAAGGTTGGGGAGTCTGTTAAAGTTGACCCAACGGAATTTGAAGCATGCATCCACCTTTCTCAGGCTGCCCTTGGTGAGGGAAAGAAAGACAAAGCAAATGAACCTGTGGTTCTGTACTTGAAGGTCGGTGAGCAGAAGTTTGTCCTGGGAACACTCTCCAGGGAGAAAATCCCTCAAATATCTCTGGAATTGGTTCTGGAGAAGGAGTTTGAACTATCCCACAGTTCAAAGAGTGCCAGTGTTCATTTCTGTGGATACAAAGCATATTACTCTGGCGATGATAGTGAGGAGGATGATTTTACTGATAGTGATGAGGATATTCCATTGGTTAACACAGAGAATGGAAAACTTGAAAAGAAAGCTGAAGAATTGAAGGCACTTGTATCTAAAAAGCTTGATGCTAAGGCTGGTGCTGCAGCAAAAAAAGTCAAGGTCGTTGAGCCAGAAAAAGACAATGAGGATTCTGATGATGATTCTGATGAAGATGATGCTTTGGGAATTTCTGATGAAGAGATGGAGGATGCCGACAGTGATGACAGTGATGAGGATGATGACAGTGATGAAGATGGCGATGAAGAGACCCCTCCTAAGAAAGCGAATTTGGCAAAGAAGAGACCAAATGAATCTGCAGCAAAAACTCCTGTCTCCTCCAAGAAAGCTAAAAATGCTTCTCCTGAAAAGACTGGTAAGAAAAACTTGAAAGCAGAAACTCCTCAATCCGTGAAAAAAGGTGGAAAGACTCCCAACACTGAAGCCAAAGACAAAAGTCCCAAGTCTGGTGGACTTGTTTGCAAAAGTTGCAGCAAGACTTTCAACACCGACACTGGTCTGCAACAACATACCAAGGCCAAGCACGGTGATCAGTGA 891 0.4355 MEFWGAEVKVGESVKVDPTEFEACIHLSQAALGEGKKDKANEPVVLYLKVGEQKFVLGTLSREKIPQISLELVLEKEFELSHSSKSASVHFCGYKAYYSGDDSEEDDFTDSDEDIPLVNTENGKLEKKAEELKALVSKKLDAKAGAAAKKVKVVEPEKDNEDSDDDSDEDDALGISDEEMEDADSDDSDEDDDSDEDGDEETPPKKANLAKKRPNESAAKTPVSSKKAKNASPEKTGKKNLKAETPQSVKKGGKTPNTEAKDKSPKSGGLVCKSCSKTFNTDTGLQQHTKAKHGDQ 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03268 296 Gene3D Nucleoplasmin core domain 1 100 - -
Viun5g03268 296 MobiDBLite consensus disorder prediction 102 126 - -
Viun5g03268 296 MobiDBLite consensus disorder prediction 142 296 - -
Viun5g03268 296 MobiDBLite consensus disorder prediction 159 199 - -
Viun5g03268 296 FunFam Histone deacetylase HDT1 1 100 - -
Viun5g03268 296 ProSiteProfiles Zinc finger C2H2 type domain profile. 270 296 IPR013087 -
Viun5g03268 296 MobiDBLite consensus disorder prediction 142 158 - -
Viun5g03268 296 MobiDBLite consensus disorder prediction 271 287 - -
Viun5g03268 296 MobiDBLite consensus disorder prediction 231 245 - -
Viun5g03268 296 Pfam Nucleoplasmin-like domain 3 94 IPR041232 -
Viun5g03268 296 ProSitePatterns Zinc finger C2H2 type domain signature. 272 293 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03268 Viun-Chr5 43362380 43365481 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g03268 1 110 C2H2 Transcription Factor Family AT5G03740 49.091 6.18e-29 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Viun5g03268 NPL 3.5e-14 CL0055
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03268 - - gmx:100792094 358.992
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g03268 5 43362380 43365481 Viun5g03268 5 43362380 43365481 ECH