Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03267 ATGGAGTTTTGGGGTGCTGAGGTTAAGGTTGGGGAGTCTGTTAAAGTTGACCCAACGGAATTTGAAGCATGCATCCACCTTTCTCAGGCTGCCCTTGGTGAGGGAAAGAAAGACAAAGCAAATGAACCTGTGGTTCTGTACTTGAAGGTCGGTGAGCAGAAGTTTGTCCTGGGAACACTCTCCAGGGAGAAAATCCCTCAAATATCTCTGGAATTGGTTCTGGAGAAGGAGTTTGAACTATCCCACAGTTCAAAGAGTGCCAGTGTTCATTTCTGTGGATACAAAGCATATTACTCTGGCGATGATAGTGAGGAGGATGATTTTACTGATAGTGATGAGGATATTCCATTGGTTAACACAGAGAATGGAAAACTTGAAAAGAAAGCTGAAGAATTGAAGGCACTTGTATCTAAAAAGCTTGATGCTAAGGCTGGTGCTGCAGCAAAAAAAGTCAAGGTCGTTGAGCCAGAAAAAGACAATGAGGATTCTGATGATGATTCTGATGAAGATGATGCTTTGGGAATTTCTGATGAAGAGATGGAGGATGCCGACAGTGATGACAGTGATGAGGATGATGACAGTGATGAAGATGGCGATGAAGAGACCCCTCCTAAGAAAGCGAATTTGGCAAAGAAGAGACCAAATGAATCTGCAGCAAAAACTCCTGTCTCCTCCAAGAAAGCTAAAAATGCTTCTCCTGAAAAGACTGAAGGTAAGAAAAACTTGAAAGCAGAAACTCCTCAATCCGTGAAAAAAGGTGGAAAGACTCCCAACACTGAAGCCAAAGACAAAAGTCCCAAGTCTGGTGGACTTGTTTGCAAAAGTTGCAGCAAGACTTTCAACACCGACACTGGTCTGCAACAACATACCAAGGCCAAGCACGGTGATCAGTGA 894 0.4351 MEFWGAEVKVGESVKVDPTEFEACIHLSQAALGEGKKDKANEPVVLYLKVGEQKFVLGTLSREKIPQISLELVLEKEFELSHSSKSASVHFCGYKAYYSGDDSEEDDFTDSDEDIPLVNTENGKLEKKAEELKALVSKKLDAKAGAAAKKVKVVEPEKDNEDSDDDSDEDDALGISDEEMEDADSDDSDEDDDSDEDGDEETPPKKANLAKKRPNESAAKTPVSSKKAKNASPEKTEGKKNLKAETPQSVKKGGKTPNTEAKDKSPKSGGLVCKSCSKTFNTDTGLQQHTKAKHGDQ 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03267 297 Gene3D Nucleoplasmin core domain 1 100 - -
Viun5g03267 297 MobiDBLite consensus disorder prediction 102 126 - -
Viun5g03267 297 MobiDBLite consensus disorder prediction 272 288 - -
Viun5g03267 297 ProSitePatterns Zinc finger C2H2 type domain signature. 273 294 IPR013087 -
Viun5g03267 297 MobiDBLite consensus disorder prediction 230 246 - -
Viun5g03267 297 MobiDBLite consensus disorder prediction 159 199 - -
Viun5g03267 297 FunFam Histone deacetylase HDT1 1 100 - -
Viun5g03267 297 MobiDBLite consensus disorder prediction 142 158 - -
Viun5g03267 297 MobiDBLite consensus disorder prediction 142 297 - -
Viun5g03267 297 ProSiteProfiles Zinc finger C2H2 type domain profile. 271 297 IPR013087 -
Viun5g03267 297 Pfam Nucleoplasmin-like domain 3 94 IPR041232 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03267 Viun-Chr5 43362380 43365481 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g03267 1 110 C2H2 Transcription Factor Family AT5G03740 49.091 5.88e-29 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Viun5g03267 NPL 3.6e-14 CL0055
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03267 - - gmx:100792094 364.385