Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03253 ATGAATTTTCAGATCGAATACCCTTTTTCATTTCAATCTTCTTCCACCGTTTTCCAATCATCATCACCATGCACACCACCCAATAATAATAATAATAATAACCCTAACCTACTCTCACATCCTTTAGTTCATGCACAATTTGTAGTTTCGCCCAAAAGGAAAGGTGGGAGAAAGAAGTTCAAGGAAACTCGCCACCCGATTTATAGGGGTGTCCGGCAAAGGAAGGGCAAGTGGGTTTGTGAGCTCAGGGAACCCAAGAAGACCACAAGGATTTGGTTAGGGACATACCCTACACCTGAAATGGCAGCTAGGGCACATGATGTGGGTGCCCTAGCAATTAGGGGCACTTCAGCGATTCTAAACTTTCCAAACTCAGCTTCTCTTCTTCCAATCCTTAACTCATCTTCACCTAAAGATATTCGAGCAGCTGCAGCAGAAGCTGCTGAGAGTTTCCGACCAATCGCGCTTTCTTCCTTGTCCAATCCTCGTAACAACAAAACTGGTCGCAAAACAAAGTGCAAGAGAGTTAGTAAAAAGGTTTCACCAATGGAGGAAACCACACAGGAAACAGTGTTGGACTCTGGCATGGAGAAAAACAACTGTGATTTGTCTTCAACCGTGTTCTTCGATGAAGAGGCATTGTTCAACATGCCTGGTCTGTTGGATAGAATGGCAGAGAGTTTATGTCTTCTTCCATTACCTTCGGTGGATTATTGGGATGATCATGCTTATTTCACAGACTTCAATCTGTGGACTGATTGA 762 0.4357 MNFQIEYPFSFQSSSTVFQSSSPCTPPNNNNNNNPNLLSHPLVHAQFVVSPKRKGGRKKFKETRHPIYRGVRQRKGKWVCELREPKKTTRIWLGTYPTPEMAARAHDVGALAIRGTSAILNFPNSASLLPILNSSSPKDIRAAAAEAAESFRPIALSSLSNPRNNKTGRKTKCKRVSKKVSPMEETTQETVLDSGMEKNNCDLSSTVFFDEEALFNMPGLLDRMAESLCLLPLPSVDYWDDHAYFTDFNLWTD 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03253 253 CDD AP2 66 125 IPR001471 GO:0003700|GO:0006355
Viun5g03253 253 SMART rav1_2 67 129 IPR001471 GO:0003700|GO:0006355
Viun5g03253 253 Pfam AP2 domain 66 115 IPR001471 GO:0003700|GO:0006355
Viun5g03253 253 SUPERFAMILY DNA-binding domain 67 125 IPR016177 GO:0003677
Viun5g03253 253 PRINTS Ethylene responsive element binding protein signature 68 79 IPR001471 GO:0003700|GO:0006355
Viun5g03253 253 PRINTS Ethylene responsive element binding protein signature 89 105 IPR001471 GO:0003700|GO:0006355
Viun5g03253 253 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 11 252 IPR045277 GO:0003700
Viun5g03253 253 Gene3D AP2/ERF domain 67 124 IPR036955 GO:0003700|GO:0006355
Viun5g03253 253 ProSiteProfiles AP2/ERF domain profile. 67 123 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03253 Viun-Chr5 43206033 43206848 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g03253 10 252 AP2-EREBP Transcription Factor Family AT4G25470 43.496 3.92e-51 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Viun5g03253 AP2 1.8e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03253 - - vum:124831015 439.884