Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03250 ATGAACAATGATGACTACTCTTTCTCTTCATCGCCATCATCTACTTCTTCTCAGAGCCAACTCTGCAACCCGAATTCTCCATCGGAAAATTCACCATTGCCCACACAAAAACCATGTGGTTCTCACAAGAGAAAAGCTGGGAGAAAAAAGTTTCAAGAAACACGACATCCAGTGTATAGAGGAGTTCGTCAGAGAAACGGTAACAAATGGGTGTGTGAAGTCCGTGAACCCAACACCAAATCAAGGATATGGCTTGGAACATACTCTACACCAGAAATGGCAGCTAGGGCACATGACGTGGCTGCCCTAGCACTTAAGGGCACCTCTGCGGCATTGAATTTCCCTGATTCGGTTTCTCTTCTTCCAGTTGCAAAGTCATCTTCAGCTGCAGATATTCGAGCTGCTGCAGCACAAGTTTCCGAGGTTTTTCTTTCAACTAACACTTCTTCATCCTCTGCAAATGATTCAAGGGTTGAAATTGAAACTAATTGTTCGGTTGTGAATGATGTTGAGGAGTTTAAGAAATCAGTGTTCTTTGACGAAGAGGCGTTTTATAACATGCCAGGTTTGTTACATAGTATGGCAGAGGGTCTTCTCATTACTCCACCTTCTATGGTGAGTTTTGATTGGGACGAGGTTGATTGTGAAACAGATCTCACTCTCTGGACATATTAA 675 0.4311 MNNDDYSFSSSPSSTSSQSQLCNPNSPSENSPLPTQKPCGSHKRKAGRKKFQETRHPVYRGVRQRNGNKWVCEVREPNTKSRIWLGTYSTPEMAARAHDVAALALKGTSAALNFPDSVSLLPVAKSSSAADIRAAAAQVSEVFLSTNTSSSSANDSRVEIETNCSVVNDVEEFKKSVFFDEEAFYNMPGLLHSMAEGLLITPPSMVSFDWDEVDCETDLTLWTY 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03250 224 MobiDBLite consensus disorder prediction 1 37 - -
Viun5g03250 224 FunFam Ethylene-responsive transcription factor 2 57 116 - -
Viun5g03250 224 PRINTS Ethylene responsive element binding protein signature 81 97 IPR001471 GO:0003700|GO:0006355
Viun5g03250 224 PRINTS Ethylene responsive element binding protein signature 59 70 IPR001471 GO:0003700|GO:0006355
Viun5g03250 224 SMART rav1_2 58 121 IPR001471 GO:0003700|GO:0006355
Viun5g03250 224 SUPERFAMILY DNA-binding domain 58 117 IPR016177 GO:0003677
Viun5g03250 224 CDD AP2 59 117 IPR001471 GO:0003700|GO:0006355
Viun5g03250 224 Gene3D AP2/ERF domain 58 116 IPR036955 GO:0003700|GO:0006355
Viun5g03250 224 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 7 224 IPR045277 GO:0003700
Viun5g03250 224 Pfam AP2 domain 57 107 IPR001471 GO:0003700|GO:0006355
Viun5g03250 224 ProSiteProfiles AP2/ERF domain profile. 58 115 IPR001471 GO:0003700|GO:0006355
Viun5g03250 224 MobiDBLite consensus disorder prediction 1 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03250 Viun-Chr5 43173640 43174320 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g03250 43 224 AP2-EREBP Transcription Factor Family AT4G25490 49.730 7.28e-57 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Viun5g03250 AP2 9.5e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03250 - - vra:106758293 301.597
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g03250 5 43173640 43174320 Viun5g03250 5 43173640 43174320 ECH
Viun5g03250 5 43173640 43174320 Viun11g01777 11 33773180 33774363 PCT