Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03247 ATGCAGGTTAGTCTTGATGGTCTGCTCTGCTGCACAATATCAGATGACCGCTCTGTAAAAATATACGATGTAGTCAACTATGACATGATGGTCATGATTCGTTTGCCATATACTCCTGGTGCTGTTGAATGGGTTTACAAACAAGGGGATGTCAAAGCCAGGCTTGCTATTAGTGATAGGAATTCATCTTTTGTGCACATATATGATGCACGAGCTGGTTCAAATGATCCCATTGTCTCCAAAGAGATACATATGTGTCCTATCAAAGTTATGAAGTACAACGCCGTATATGATTCCGTACTTTCAGCAGATGCGAAGGGGATAATTGAATACTGGAGTCCTGTAACACTTCAATTCCCAGAGGATGAGGTCAATTTTAAACTGAAAAGTGATACTGACCTCTTTGAAATTGCAAAATGCAAGACTTCTGTTTCGGCTATTGAGGTAAGTCCAGATGGTAAACAATTTTCCATTACATCACCTGATCGAAGGATACGTGTGTTTTGGTTCAGAACGGGGAAATTAAGGCGAGTTTATGATGAATCTTTAGAGGTTGCTCAAGATCTCCAAAGAAGTGATGCTCCATTATATCGGTTGGAAGCTATTGATTTTGGTCGAAGAATGGCTGTTGAGAAGGAAATAGAAAAAACAGAAAGTGCACCACTTCCAAATGCAGTCTTTGATGAAAGTTCCAATTTTCTTATATATGCAACCTTGCTTGGGATAAAAATTGTTAATCTGCACACCAATAAAGTTAGTCGAATACTTGGAAAGGTGGAGAATAATGATAGGTTCTTAAGAATAGCTTTATATCAAGGTGATCGGAGTAGCAAAAGAGTAAGAAAGATTCCTTCAGCAGCTGCAAATGTTAATGAGAGTAAGGAGCCTTTGACAGATCCCACTCTCTTGTGTTGTGCCTTTAAAAAGCACAGAATCTATTTATTCAGTCGAAGAGAGCCGGAGGAGCCTGAAGATGCAACTAAAGGAAGAGATGTGTTCAATGAAAAACCTCCTGCTGATGAACTTTTGGCAGTTTCAGACATTGGAAAGTCAGTTACAACATCACTTCCTGAGAATGTGATTCTACACACCACAATGGGTGATATTCACATGAAATTATACCCTGAGGAATGTCCAAAAACTGTGGAGAATTTCACAACACACTGCCGAAATGGCTATTATGACAATCTTATTTTTCATAGGGTCATCAAAGGCTTCATGATTCAAACAGGAGATCCTCTGGGAGATGGCACTGGTGGGCAATCTATTTGGGGGAGAGAATTTGAGGATGAATTTCATAAAAGTTTGAGGCATGATAGACCGTTCACAGTTTCAATGGCAAATGCTGGCCCAAATACAAATGGCTCTCAGTTCTTTATCACCACAGTGGCTACTCCATGGTTGGACAACAAGCACACTGTATTTGGTAGAGTTGCAAAGGGAATGGATGTTGTACAGGCCATAGAGAAAGTGAAAACAGACAAGACAGACAAGCCATATCAAGATGTTAAAATTCTAAACGTCACTGTGCCGAAGTCTTGA 1542 0.3988 MQVSLDGLLCCTISDDRSVKIYDVVNYDMMVMIRLPYTPGAVEWVYKQGDVKARLAISDRNSSFVHIYDARAGSNDPIVSKEIHMCPIKVMKYNAVYDSVLSADAKGIIEYWSPVTLQFPEDEVNFKLKSDTDLFEIAKCKTSVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTESAPLPNAVFDESSNFLIYATLLGIKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKRVRKIPSAAANVNESKEPLTDPTLLCCAFKKHRIYLFSRREPEEPEDATKGRDVFNEKPPADELLAVSDIGKSVTTSLPENVILHTTMGDIHMKLYPEECPKTVENFTTHCRNGYYDNLIFHRVIKGFMIQTGDPLGDGTGGQSIWGREFEDEFHKSLRHDRPFTVSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVAKGMDVVQAIEKVKTDKTDKPYQDVKILNVTVPKS 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03247 513 CDD cyclophilin_WD40 361 508 - -
Viun5g03247 513 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 394 411 IPR020892 GO:0003755|GO:0006457
Viun5g03247 513 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 373 388 IPR002130 GO:0000413|GO:0003755
Viun5g03247 513 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 470 485 IPR002130 GO:0000413|GO:0003755
Viun5g03247 513 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 457 469 IPR002130 GO:0000413|GO:0003755
Viun5g03247 513 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 399 411 IPR002130 GO:0000413|GO:0003755
Viun5g03247 513 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 442 457 IPR002130 GO:0000413|GO:0003755
Viun5g03247 513 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 360 510 IPR002130 GO:0000413|GO:0003755
Viun5g03247 513 Gene3D - 348 513 IPR029000 -
Viun5g03247 513 SUPERFAMILY WD40 repeat-like 3 245 IPR036322 GO:0005515
Viun5g03247 513 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 356 510 IPR002130 GO:0000413|GO:0003755
Viun5g03247 513 SUPERFAMILY Cyclophilin-like 358 510 IPR029000 -
Viun5g03247 513 Gene3D - 1 347 IPR015943 GO:0005515
Viun5g03247 513 FunFam Peptidylprolyl isomerase domain and WD repeat-containing 1 341 511 - -
Viun5g03247 513 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED 355 509 IPR044666 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03247 Viun-Chr5 43154439 43160381 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g03247 360 510 U-box Gene Family AT5G67530 47.020 2.81e-42 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03247 K12736 - gmx:100792207 1000.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g03247 5 43154439 43160381 Viun5g03247 5 43154439 43160381 ECH