Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03245 ATGAAGGTTGTGGGTGCATATTTGCTTGCAGTGTTGGGAGGGAACCCAGACCCTTCTGCAAGTGATATCAAACACATCCTTGGTGCAGTTGGAGCTGAAGCTGACGATGAGTTGATTAAATTGCTCTTGACTGAAGTTAAGGGCAAAGACTTCAACGAGCTACTCGCCAGCGGAAGGGAAAAGATGTCTGCTGTGTCTGGCGGTGGTGGTGCGGTGGCTGTTGCTGCTGCGCCAGCTGCCGGTGGCGGTGGTGCCGCACCTGCCGCCGAAGCAAAGGAAGAAAAGAAAGTGGAAGAGAAGGAGGAGTCCGATGATGATATGGGTTTCAGTTTGTTTGACTAA 342 0.5175 MKVVGAYLLAVLGGNPDPSASDIKHILGAVGAEADDELIKLLLTEVKGKDFNELLASGREKMSAVSGGGGAVAVAAAPAAGGGGAAPAAEAKEEKKVEEKEESDDDMGFSLFD 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03245 113 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER 1 113 IPR044076 GO:0002182|GO:0003735|GO:0022625
Viun5g03245 113 Gene3D - 1 59 IPR038716 -
Viun5g03245 113 CDD Ribosomal_P2 1 113 IPR044076 GO:0002182|GO:0003735|GO:0022625
Viun5g03245 113 MobiDBLite consensus disorder prediction 89 103 - -
Viun5g03245 113 FunFam 60S acidic ribosomal protein P2 1 59 - -
Viun5g03245 113 Hamap 50S ribosomal protein L12 [rpl12]. 2 113 IPR027534 GO:0003735|GO:0005840|GO:0006414
Viun5g03245 113 Pfam 60s Acidic ribosomal protein 18 112 - -
Viun5g03245 113 MobiDBLite consensus disorder prediction 79 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03245 Viun-Chr5 43151149 43152570 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g03245 1 113 Cytoplasmic Ribosomal Protein Gene Family AT3G44590 66.372 1.78e-27 95.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03245 K02943 - gmx:100306264 127.487
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g03245 5 43151149 43152570 Viun5g03245 5 43151149 43152570 ECH