Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03237 ATGTCTCTCTCTGAAGTGCAAAAGCAAACTCAAAATGTAAGCCAAGTTACTCCAGAAAAGGAGAACTGGAATATCATTGTTAGGGTGATATGTTCATGGTTCGTTCCAGATTTCACTAAACAAAGGTGTCCTTTTTCCATGAAGTTGGTTATTCAAGACAAAGAGGGTTCTAAAATACATGCTTCCATCAGACGTACTCTAATTTACAAATTCCAGACTGAAATTTCTGAAGGTGATGTTTATGCCATACAAAATTTCAGTGTTGCTCCAAATTCTGGAATTTACAGAACTACGCACCACCCTTATAAGATTAATTTCCAGTTTGGTACCAAAGTTAGTTTGCTTGATGGTAACTTGGTTCCTGATGTGAAACCACAATACATACCTTTGTCATTATTGACAACCACTGGATTCGATACTGATTATTTAGTTGATGTATTGGGATTACTGGTCGGAGTGGGTACTGAAAGAGAATTGCAAGTTGATGGAAAGACAACAAAATTAAATGTCATTGCAATAGAAGCTGATGGGTTTCGAATAGAATGTACTTTGTTTGGTATTTATGTCGATGAACTGAATGTATTTCTTTCAAGTGGAGAAGTACAAAATTGTGCTATAAGTATAGAATTTGCGAAAGTCAAAACTTTTCAAGATAAGGTTCAACTTCAAAATTGCAAGTTCTGCACTAGGATTAAGTACAATGTTAACTTCAAGGAGGCATCTGAACTTAAATCAAGGATGATTGAGAACAATGAATCTCCCTCTCAAGGATTAACGCAGCTGTCTCAGACTTCCAAAAATACTGTGGAAGAAGACTTTTTAACTGTTACACCTAGGACAACTATTCAAGGTCTTAAAGATTGTAAAGAGGTTGCAACTTTCATATTGTTTGGAACCATTAACCATATCTTGGATGAGGATGACTGGTGGTATACGGCTTGTGTTTGCAACAAAGCTGTTTATCCAGATTCAAAGATGTTCTTTTGCGAGAAGTGTAACAAGCATGTTATAAAAGTCTTTCCAAGATATAGGATTAAGGTTCGAGTTATTGACTCATCCGATTCCACCACATTTGTTCTGTTTGATAGGGATGCAACCACCCTTTTCAAAAAAACCTGTGCTGATATGTTAGAGTCTCATGATAAGGATGTTTATGCTGGCAATGGTGAGTTTAGCAGAGAAAAACAGCGTGTAGTCAATGAGTCTACTGTTGATATTGCCGAGGATTTATTAGTCAGATTTACCAAAGAAACAATTGACTGTGCATCCCAATCTGCTGACTTAATCAAAGATACTGCTACGAATGAGGATGGTAACACTTCACTTAAGAGAGAATCTGCAAATAAGACCTTATCACTTGAATCCATCGAAGAAGACACTTCCTACCAAATGGAGAACAACTTCAACCAAGAACAAGTTGTTAATAGAATGAGTAGGTACCAGTTCTGTATTATCCACCTTGAGGATGAGGTTGTTGGGTTTGTGGATCGTGCATTCGCCATTCTTTATGATCACGATCTTCAACGTCAATGGACTTTAACAGATGAAGAAGGCAATAGACATGTCGTCACTTATAACAAGAATTTACAGAAACCAATGGTAATAGGAGGATGGAATGATTTAAGGGAATTTTATGAACTACACGATAACCACAGTATTTATTTTGGATATGTTGGTCATTCTTGCTTCCACATCACTGTTTTTCCAAGTAAATGCAAACCTTTATCTATTGGACGTTTTCTTAAAAGACTTCAAGCAGATGAACCACTTTTCAATGGACCGAAGTTGCATTTTTGCATATTTCTGAATCCAAACCAATGCCATGCTAGCCATCTGGATTTGCCTTCTGATTTTGGCAATTATCTTCGTCAAGGAAGATTTAAATACATTCTTCTTCATGGACCTCGCGAAATAGTCAAGTGCAAACTACTCTTGAGAAATCATCCAAAGAAGTCTAACAAAATAGGAAGTGGGTGGAAGGAATTTTGTACTGCTCATGGATTTGATCAACCTATTGACTTGGTGTTTGAAGTTGATCAGATGAAAAGCAATCAGAATGTCAAAGTGCTTACATATTGTAATCTTTAA 2088 0.3654 MSLSEVQKQTQNVSQVTPEKENWNIIVRVICSWFVPDFTKQRCPFSMKLVIQDKEGSKIHASIRRTLIYKFQTEISEGDVYAIQNFSVAPNSGIYRTTHHPYKINFQFGTKVSLLDGNLVPDVKPQYIPLSLLTTTGFDTDYLVDVLGLLVGVGTERELQVDGKTTKLNVIAIEADGFRIECTLFGIYVDELNVFLSSGEVQNCAISIEFAKVKTFQDKVQLQNCKFCTRIKYNVNFKEASELKSRMIENNESPSQGLTQLSQTSKNTVEEDFLTVTPRTTIQGLKDCKEVATFILFGTINHILDEDDWWYTACVCNKAVYPDSKMFFCEKCNKHVIKVFPRYRIKVRVIDSSDSTTFVLFDRDATTLFKKTCADMLESHDKDVYAGNGEFSREKQRVVNESTVDIAEDLLVRFTKETIDCASQSADLIKDTATNEDGNTSLKRESANKTLSLESIEEDTSYQMENNFNQEQVVNRMSRYQFCIIHLEDEVVGFVDRAFAILYDHDLQRQWTLTDEEGNRHVVTYNKNLQKPMVIGGWNDLREFYELHDNHSIYFGYVGHSCFHITVFPSKCKPLSIGRFLKRLQADEPLFNGPKLHFCIFLNPNQCHASHLDLPSDFGNYLRQGRFKYILLHGPREIVKCKLLLRNHPKKSNKIGSGWKEFCTAHGFDQPIDLVFEVDQMKSNQNVKVLTYCNL 695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03237 695 CDD RPA1_DBD_A_like 25 112 - -
Viun5g03237 695 Pfam Domain of unknown function DUF223 49 114 IPR003871 -
Viun5g03237 695 SUPERFAMILY Nucleic acid-binding proteins 137 247 IPR012340 -
Viun5g03237 695 CDD RPA1_DBD_B_like 145 248 - -
Viun5g03237 695 Gene3D - 120 256 IPR012340 -
Viun5g03237 695 CDD RPA1_DBD_C 294 383 IPR047192 -
Viun5g03237 695 SUPERFAMILY Nucleic acid-binding proteins 12 115 IPR012340 -
Viun5g03237 695 Pfam Replication factor-A C terminal domain 297 383 IPR013955 -
Viun5g03237 695 SUPERFAMILY DNA-binding pseudobarrel domain 592 691 IPR015300 -
Viun5g03237 695 Gene3D - 8 113 IPR012340 -
Viun5g03237 695 Gene3D - 260 428 IPR012340 -
Viun5g03237 695 Gene3D - 475 572 IPR015300 -
Viun5g03237 695 Gene3D - 592 693 IPR015300 -
Viun5g03237 695 SUPERFAMILY DNA-binding pseudobarrel domain 495 571 IPR015300 -
Viun5g03237 695 SUPERFAMILY Nucleic acid-binding proteins 277 383 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03237 Viun-Chr5 43105527 43110057 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g03237 16 384 Core DNA Replication Machinery Family AT5G08020 24.623 1.40e-12 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03237 - - vun:114184752 1407.51