Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03225 ATGGCCGAAGAACACCGATGCCAGGCACCACGCTTGTGCGTCAACAATTGCGGTTTCTTTGGCAGCCCTGCCACGCAGAATCTGTGCTCGAAGTGTTACCGCGATTTGCAGCTCAACGAGCAGCAATCTTCCAACGCAAAGATGGTTCTGAATCAGTCTCTCGTTGTTCCGGCGGCTCCGGCGCCGGTTTCTCAGCCGTCTTCTTCGAAGGCGGCGGATCCGGCTTCTGCTGTGGTTGAGGAGGCGCCACGCGCGGCGGAGGAGGCTAAGGCGCCGCAGCAGAACCGGTGTATGACGTGCAGGCGGCGCGTGGGGTTGACGGGGTTCAAGTGCCGGTGCGGGATGATGCTTTGCGGGACGCACCGTTACCCGGAGCAGCACGCGTGCGAGTTCGACTTCAAGGGGATGGGGAGGGACCAGATCGCGAAGGCGAATCCGGTGGTGAAGGGCGAGAAGCTCGAGAAGATCTGA 471 0.6136 MAEEHRCQAPRLCVNNCGFFGSPATQNLCSKCYRDLQLNEQQSSNAKMVLNQSLVVPAAPAPVSQPSSSKAADPASAVVEEAPRAAEEAKAPQQNRCMTCRRRVGLTGFKCRCGMMLCGTHRYPEQHACEFDFKGMGRDQIAKANPVVKGEKLEKI 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03225 156 ProSiteProfiles Zinc finger A20-type profile. 7 41 IPR002653 GO:0003677|GO:0008270
Viun5g03225 156 Gene3D - 1 55 - -
Viun5g03225 156 SMART AN1_Zf_4 97 134 IPR000058 GO:0008270
Viun5g03225 156 PANTHER AN1-TYPE ZINC FINGER PROTEIN 9 156 - -
Viun5g03225 156 Pfam A20-like zinc finger 11 34 IPR002653 GO:0003677|GO:0008270
Viun5g03225 156 FunFam Zinc finger AN1-type containing 6 68 152 - -
Viun5g03225 156 ProSiteProfiles Zinc finger AN1-type profile. 91 137 IPR000058 GO:0008270
Viun5g03225 156 SUPERFAMILY AN1-like Zinc finger 82 151 IPR035896 -
Viun5g03225 156 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 12 56 - -
Viun5g03225 156 Pfam AN1-like Zinc finger 97 133 IPR000058 GO:0008270
Viun5g03225 156 Gene3D - 66 152 IPR035896 -
Viun5g03225 156 SMART A20_3 10 34 IPR002653 GO:0003677|GO:0008270
Viun5g03225 156 MobiDBLite consensus disorder prediction 59 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03225 Viun-Chr5 43018163 43019342 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g03225 1 156 C2H2 Transcription Factor Family AT3G52800 50.292 2.52e-48 152