Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03224 ATGAGTTTTAGGGAGTGCAATGTAGAAAACGAGAATCTGTGTGTTCAAACCCCAACTTTTATTGAGTGGCTGAAACCATCTTCTTCTTCTGTAATTAGTTCGATATCATCATCACCTTCTCCTTTGTCTCAGCATGATCAAGAAACGATCCAGTTTTTGCCCTTCAAGGAAAACCATGAAAAGGATGGTTTAGAAGTGAAAGAAGAGAAGGTGGAACAGGTCACTGTGGCTTTGCACATTGGATTGCCTCACACAGAAGAATATGACGCTGATAATCATGAAGCCACTGAGAAGAAGATTACCCATGTAAAGGAAGAAGAGCCCTTCAAGAAAAGCTTCCATGGTTGTTCTTTCAACCAGGAGAGAAGATTTTGGATACCAACTCCTGCACAGATCCTTGTTGGACCGATGCAGTTTGCTTGCTCCATCTGCAGCAAGACCTTCAATAGATATAACAATATGCAGATGCATATGTGGGGGCACGGATCCGAATTCAGAAAAGGACCAGACTCACTGAAAGGAACACAACCAGCAGCAATGTTAAGGCTACCATGTTACTGTTGTGCCCAGGGTTGCAAGAACAACATCAATCATCCAAGAGCCAAGCCCTTGAAGGACTTCAGAACTCTCCAAACCCACTACAAAAGAAAGCATGGTGCAAAACCATTTATGTGCAGAAAGTGTTCAAAATCCTTTGCAGTTAAAGGGGATTGGAGGACTCACGAAAAGAACTGCGGAAAGTTGTGGTATTGCACTTGTGGTTCAGATTTTAAGCACAAAAGATCCCTAAAAGACCACATTAGATCCTTCGGAAATGGCCACTCCCCTCATCCCTCTCATGAAGGCTTCGTTGAAGATGAGAAAGAATGCGTTACTGCATCTGATGAAGATGAAGTTGCTCATACATGA 909 0.4279 MSFRECNVENENLCVQTPTFIEWLKPSSSSVISSISSSPSPLSQHDQETIQFLPFKENHEKDGLEVKEEKVEQVTVALHIGLPHTEEYDADNHEATEKKITHVKEEEPFKKSFHGCSFNQERRFWIPTPAQILVGPMQFACSICSKTFNRYNNMQMHMWGHGSEFRKGPDSLKGTQPAAMLRLPCYCCAQGCKNNINHPRAKPLKDFRTLQTHYKRKHGAKPFMCRKCSKSFAVKGDWRTHEKNCGKLWYCTCGSDFKHKRSLKDHIRSFGNGHSPHPSHEGFVEDEKECVTASDEDEVAHT 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03224 302 SUPERFAMILY beta-beta-alpha zinc fingers 209 243 IPR036236 -
Viun5g03224 302 ProSitePatterns Zinc finger C2H2 type domain signature. 141 161 IPR013087 -
Viun5g03224 302 SMART c2h2final6 186 218 IPR013087 -
Viun5g03224 302 SMART c2h2final6 223 243 IPR013087 -
Viun5g03224 302 SMART c2h2final6 139 161 IPR013087 -
Viun5g03224 302 ProSiteProfiles Zinc finger C2H2 type domain profile. 139 166 IPR013087 -
Viun5g03224 302 FunFam Zinc finger protein WIP2 192 274 - -
Viun5g03224 302 Gene3D Classic Zinc Finger 180 272 - -
Viun5g03224 302 SUPERFAMILY beta-beta-alpha zinc fingers 106 162 IPR036236 -
Viun5g03224 302 PANTHER ZINC FINGER PROTEIN WIP2 17 290 IPR043584 GO:0003700|GO:0010468
Viun5g03224 302 Pfam Zinc finger, C2H2 type 139 158 IPR013087 -
Viun5g03224 302 Gene3D Classic Zinc Finger 138 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03224 Viun-Chr5 43008491 43012440 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g03224 9 293 C2H2 Transcription Factor Family AT1G08290 57.313 2.88e-119 344
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Viun5g03224 zf-C2H2_6 0.00013 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03224 - - gmx:100819306 523.472
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g03224 5 43008491 43012440 Viun5g03224 5 43008491 43012440 ECH
Viun5g03224 5 43008491 43012440 Viun11g01746 11 33489379 33492786 PCT