Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03217 ATGTTCCCTTCATGGCCAATGAGATTCCAACAAACCCCAAGAGGTGGTTCAAAGTCAGGAGGGGAAAGCACTGATTCAGGTCTTTCCAGCAAGACTGAGCCCCCCCTTGAGGCAGAATCTCCCATGAGTAAAAAGGCATCTTCTTCAGATCACCAGGCTTTTGATCAGCAGCATCTGCAGCAAAGACAGCAACTTCAACAGGATATGGCAAGTGATGCCGCAAGAACACCCTCTTCACAGAATCAATCAGCAGCCAAATCACAAGAAAAGAGAAAGGGAGCTGGTTCAACATCAGAGAAACCACTTGATGCAAAGACACTAAGACGTTTAGCTCAAAACAGAGAGGCTGCAAGGAAAAGCCGTCTCAGGAAAAAGGCTTATGTGCAGCAACTAGAATCAAGTAGATTAAAGCTTACCCAGATAGAACAAGAACTCCAAAGAGCACGTTCTCAGGGCTTGTTCGTGGATTGTGGTGGTGTTGGAAGCAATGTATGCTCTGCAGGAGCCGCAATGTTTGACATGGAATATGGAAGATGGTTAGAAGAAGATCACAGGCTAATGGGGGAGCTTCGTAACGGGTTGCAAGTACCCTTATCAGATAGTGATATGAGAGTGATGGTGGATGGATATCTCTCCCACTATGATGAGATTTTCAGGCTCAAGGGTGTGGCTGCAAAATCAGATGTGTTTCACCTTATCAATGGCATGTGGACTTCCCAAGCTGAACGTTGCTTCCTCTGGATTGGTGGTTTTAGACCCTCTGATCTCATCACGATGCTGATACAACAATTGGAGCCACTGGCTGAGCAACAGATAATGGGAATGTATGGTCTGAGACATTCCTCACAGCAAGCAGAAGAAGCACTCTCTCAGGGCCTTGAACAGTTGCAGCAATCTCTGGTGGACACCATTGCTGGAGGCCCAGTTGTTGATGGTGTGCAACAAATGGTGGTTGCCATGAGCAAACTAGCCAATCTTGAAGGATTTGTTCGTCAGGCTGATAATTTGAGGCAACAAACTCTTCATCAGTTATGTCGATTACTCACAGTTCGTCAAGCAGCACGATGTTTCATTGTGATCGGAGAATACTATGGTCGTCTTCGAGCCCTTAGTTCTCTCTGGGCATCAAGACCACGAGAGACCTTGATCGGTGATGACAACTCATGCCAAACAACCACAGAAATGCAAGTGGTCCAACATTCTCAGAATCATTTCTCAACTTTCTGA 1227 0.4613 MFPSWPMRFQQTPRGGSKSGGESTDSGLSSKTEPPLEAESPMSKKASSSDHQAFDQQHLQQRQQLQQDMASDAARTPSSQNQSAAKSQEKRKGAGSTSEKPLDAKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQIEQELQRARSQGLFVDCGGVGSNVCSAGAAMFDMEYGRWLEEDHRLMGELRNGLQVPLSDSDMRVMVDGYLSHYDEIFRLKGVAAKSDVFHLINGMWTSQAERCFLWIGGFRPSDLITMLIQQLEPLAEQQIMGMYGLRHSSQQAEEALSQGLEQLQQSLVDTIAGGPVVDGVQQMVVAMSKLANLEGFVRQADNLRQQTLHQLCRLLTVRQAARCFIVIGEYYGRLRALSSLWASRPRETLIGDDNSCQTTTEMQVVQHSQNHFSTF 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03217 408 PANTHER TRANSCRIPTION FACTOR TGA9 42 380 - -
Viun5g03217 408 Pfam Seed dormancy control 187 261 IPR025422 GO:0006351|GO:0043565
Viun5g03217 408 SMART brlzneu 101 166 IPR004827 GO:0003700|GO:0006355
Viun5g03217 408 MobiDBLite consensus disorder prediction 42 91 - -
Viun5g03217 408 Coils Coil 124 151 - -
Viun5g03217 408 FunFam BZIP family transcription factor 104 153 - -
Viun5g03217 408 MobiDBLite consensus disorder prediction 92 107 - -
Viun5g03217 408 Gene3D - 104 153 - -
Viun5g03217 408 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 103 147 IPR004827 GO:0003700|GO:0006355
Viun5g03217 408 Pfam bZIP transcription factor 104 140 IPR004827 GO:0003700|GO:0006355
Viun5g03217 408 MobiDBLite consensus disorder prediction 1 107 - -
Viun5g03217 408 MobiDBLite consensus disorder prediction 10 33 - -
Viun5g03217 408 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 108 123 IPR004827 GO:0003700|GO:0006355
Viun5g03217 408 SUPERFAMILY Leucine zipper domain 105 148 IPR046347 GO:0003700|GO:0006355
Viun5g03217 408 ProSiteProfiles DOG1 domain profile. 169 377 IPR025422 GO:0006351|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03217 Viun-Chr5 42952658 42959282 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g03217 48 408 bZIP Transcription Factor Family AT1G08320 67.582 3.21e-180 504
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Viun5g03217 DOG1 3.9e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03217 K14431 - gmx:100775461 707.597