Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03216 ATGGCGAGCCACAGAATAGGAGAACTCGGTTTGTCTGAGTCGGGACCTTCAAGTCACCACATCCCTTATGGAGTGCTTCATGGAATTAACACTACTACTCCAGTATCAAGCTTAATCAATCAAGGATCTGCTTTTGATTTTGGGGAGCTGGAGGAAGCAATTGTTCTGCATGGAGTTAAGGGTAGAAATGATGATGACAAAGCATCTTTATTCACAGCCAGACCTGCAGCTACACTGGAAATGTTCCCTTCATGGCCAATGAGATTCCAACAAACCCCAAGAGGTGGTTCAAAGTCAGGAGGGGAAAGCACTGATTCAGGTCTTTCCAGCAAGACTGAGCCCCCCCTTGAGGCAGAATCTCCCATGAGTAAAAAGGCATCTTCTTCAGATCACCAGGCTTTTGATCAGCAGCATCTGCAGCAAAGACAGCAACTTCAACAGGATATGGCAAGTGATGCCGCAAGAACACCCTCTTCACAGAATCAATCAGCAGCCAAATCACAAGAAAAGAGAAAGGGAGCTGGTTCAACATCAGAGAAACCACTTGATGCAAAGACACTAAGACGTTTAGCTCAAAACAGAGAGGCTGCAAGGAAAAGCCGTCTCAGGAAAAAGGCTTATGTGCAGCAACTAGAATCAAGTAGATTAAAGCTTACCCAGATAGAACAAGAACTCCAAAGAGCACGTTCTCAGGGCTTGTTCGTGGATTGTGGTGGTGTTGGAAGCAATGTATGCTCTGCAGGAGCCGCAATGTTTGACATGGAATATGGAAGATGGTTAGAAGAAGATCACAGGCTAATGGGGGAGCTTCGTAACGGGTTGCAAGTACCCTTATCAGATAGTGATATGAGAGTGATGGTGGATGGATATCTCTCCCACTATGATGAGATTTTCAGGCTCAAGGGTGTGGCTGCAAAATCAGATGTGTTTCACCTTATCAATGGCATGTGGACTTCCCAAGCTGAACGTTGCTTCCTCTGGATTGGTGGTTTTAGACCCTCTGATCTCATCACGATGCTGATACAACAATTGGAGCCACTGGCTGAGCAACAGATAATGGGAATGTATGGTCTGAGACATTCCTCACAGCAAGCAGAAGAAGCACTCTCTCAGGGCCTTGAACAGTTGCAGCAATCTCTGGTGGACACCATTGCTGGAGGCCCAGTTGTTGATGGTGTGCAACAAATGGTGGTTGCCATGAGCAAACTAGCCAATCTTGAAGGATTTGTTCGTCAGGCTGATAATTTGAGGCAACAAACTCTTCATCAGTTATGTCGATTACTCACAGTTCGTCAAGCAGCACGATGTTTCATTGTGATCGGAGAATACTATGGTCGTCTTCGAGCCCTTAGTTCTCTCTGGGCATCAAGACCACGAGAGACCTTGATCGGTGATGACAACTCATGCCAAACAACCACAGAAATGCAAGTGGTCCAACATTCTCAGAATCATTTCTCAACTTTCTGA 1467 0.4588 MASHRIGELGLSESGPSSHHIPYGVLHGINTTTPVSSLINQGSAFDFGELEEAIVLHGVKGRNDDDKASLFTARPAATLEMFPSWPMRFQQTPRGGSKSGGESTDSGLSSKTEPPLEAESPMSKKASSSDHQAFDQQHLQQRQQLQQDMASDAARTPSSQNQSAAKSQEKRKGAGSTSEKPLDAKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQIEQELQRARSQGLFVDCGGVGSNVCSAGAAMFDMEYGRWLEEDHRLMGELRNGLQVPLSDSDMRVMVDGYLSHYDEIFRLKGVAAKSDVFHLINGMWTSQAERCFLWIGGFRPSDLITMLIQQLEPLAEQQIMGMYGLRHSSQQAEEALSQGLEQLQQSLVDTIAGGPVVDGVQQMVVAMSKLANLEGFVRQADNLRQQTLHQLCRLLTVRQAARCFIVIGEYYGRLRALSSLWASRPRETLIGDDNSCQTTTEMQVVQHSQNHFSTF 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03216 488 CDD bZIP_HBP1b-like 185 235 - -
Viun5g03216 488 ProSiteProfiles DOG1 domain profile. 249 457 IPR025422 GO:0006351|GO:0043565
Viun5g03216 488 Pfam bZIP transcription factor 184 220 IPR004827 GO:0003700|GO:0006355
Viun5g03216 488 MobiDBLite consensus disorder prediction 172 187 - -
Viun5g03216 488 MobiDBLite consensus disorder prediction 122 171 - -
Viun5g03216 488 MobiDBLite consensus disorder prediction 82 187 - -
Viun5g03216 488 Pfam Seed dormancy control 267 341 IPR025422 GO:0006351|GO:0043565
Viun5g03216 488 SMART brlzneu 181 246 IPR004827 GO:0003700|GO:0006355
Viun5g03216 488 MobiDBLite consensus disorder prediction 90 113 - -
Viun5g03216 488 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 188 203 IPR004827 GO:0003700|GO:0006355
Viun5g03216 488 Gene3D - 184 233 - -
Viun5g03216 488 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 183 227 IPR004827 GO:0003700|GO:0006355
Viun5g03216 488 Coils Coil 204 231 - -
Viun5g03216 488 PANTHER TRANSCRIPTION FACTOR TGA9 118 460 - -
Viun5g03216 488 FunFam BZIP family transcription factor 184 233 - -
Viun5g03216 488 SUPERFAMILY Leucine zipper domain 185 228 IPR046347 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03216 Viun-Chr5 42952145 42959282 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g03216 128 488 bZIP Transcription Factor Family AT1G08320 67.582 4.65e-179 504
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Viun5g03216 DOG1 5.2e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03216 K14431 - gmx:100775461 842.417
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g03216 5 42952145 42959282 Viun5g03216 5 42952145 42959282 ECH
Viun5g03216 5 42952145 42959282 Viun11g01734 11 33430741 33437693 PCT