Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03215 ATGGCGAGCCACAGAATAGGAGAACTCGGTTTGTCTGAGTCGGGACCTTCAAGTCACCACATCCCTTATGGAGTGCTTCATGGAATTAACACTACTACTCCAGTATCAAGCTTAATCAATCAAGGATCTGCTTTTGATTTTGGGGAGCTGGAGGAAGCAATTGTTCTGCATGGAGTTAAGGGTAGAAATGATGATGACAAAGCATCTTTATTCACAGCCAGACCTGCAGCTACACTGGAAATGTTCCCTTCATGGCCAATGAGATTCCAACAAACCCCAAGAGGTGGTTCAAAGTCAGGAGGGGAAAGCACTGATTCAGGTCTTTCCAGCAAGACTGAGCCCCCCCTTGAGGCAGAATCTCCCATGAGTAAAAAGGCATCTTCTTCAGATCACCAGGCTTTTGATCAGCAGCATCTGCAGCAAAGACAGCAACTTCAACAGGATATGGCAAGTGATGCCGCAAGAACACCCTCTTCACAGAATCAATCAGCAGCCAAATCACAAGAAAAGAGAAAGGGAGCTGGTTCAACATCAGAGAAACCACTTGATGCAAAGACACTAAGACGTTTAGCTCAAAACAGAGAGGCTGCAAGGAAAAGCCGTCTCAGGAAAAAGGCTTATGTGCAGCAACTAGAATCAAGTAGATTAAAGCTTACCCAGATAGAACAAGAACTCCAAAGAGCACGTTCTCAGGGCTTGTTCGTGGATTGTGGTGGTGTTGGAAGCAATGTATGCTCTGGAGCCGCAATGTTTGACATGGAATATGGAAGATGGTTAGAAGAAGATCACAGGCTAATGGGGGAGCTTCGTAACGGGTTGCAAGTACCCTTATCAGATAGTGATATGAGAGTGATGGTGGATGGATATCTCTCCCACTATGATGAGATTTTCAGGCTCAAGGGTGTGGCTGCAAAATCAGATGTGTTTCACCTTATCAATGGCATGTGGACTTCCCAAGCTGAACGTTGCTTCCTCTGGATTGGTGGTTTTAGACCCTCTGATCTCATCACGATGCTGATACAACAATTGGAGCCACTGGCTGAGCAACAGATAATGGGAATGTATGGTCTGAGACATTCCTCACAGCAAGCAGAAGAAGCACTCTCTCAGGGCCTTGAACAGTTGCAGCAATCTCTGGTGGACACCATTGCTGGAGGCCCAGTTGTTGATGGTGTGCAACAAATGGTGGTTGCCATGAGCAAACTAGCCAATCTTGAAGGATTTGTTCGTCAGGCTGATAATTTGAGGCAACAAACTCTTCATCAGTTATGTCGATTACTCACAGTTCGTCAAGCAGCACGATGTTTCATTGTGATCGGAGAATACTATGGTCGTCTTCGAGCCCTTAGTTCTCTCTGGGCATCAAGACCACGAGAGACCTTGATCGGTGATGACAACTCATGCCAAACAACCACAGAAATGCAAGTGGTCCAACATTCTCAGAATCATTTCTCAACTTTCTGA 1464 0.4583 MASHRIGELGLSESGPSSHHIPYGVLHGINTTTPVSSLINQGSAFDFGELEEAIVLHGVKGRNDDDKASLFTARPAATLEMFPSWPMRFQQTPRGGSKSGGESTDSGLSSKTEPPLEAESPMSKKASSSDHQAFDQQHLQQRQQLQQDMASDAARTPSSQNQSAAKSQEKRKGAGSTSEKPLDAKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQIEQELQRARSQGLFVDCGGVGSNVCSGAAMFDMEYGRWLEEDHRLMGELRNGLQVPLSDSDMRVMVDGYLSHYDEIFRLKGVAAKSDVFHLINGMWTSQAERCFLWIGGFRPSDLITMLIQQLEPLAEQQIMGMYGLRHSSQQAEEALSQGLEQLQQSLVDTIAGGPVVDGVQQMVVAMSKLANLEGFVRQADNLRQQTLHQLCRLLTVRQAARCFIVIGEYYGRLRALSSLWASRPRETLIGDDNSCQTTTEMQVVQHSQNHFSTF 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03215 487 CDD bZIP_HBP1b-like 185 235 - -
Viun5g03215 487 Pfam bZIP transcription factor 184 220 IPR004827 GO:0003700|GO:0006355
Viun5g03215 487 MobiDBLite consensus disorder prediction 172 187 - -
Viun5g03215 487 ProSiteProfiles DOG1 domain profile. 248 456 IPR025422 GO:0006351|GO:0043565
Viun5g03215 487 MobiDBLite consensus disorder prediction 122 171 - -
Viun5g03215 487 MobiDBLite consensus disorder prediction 82 187 - -
Viun5g03215 487 SMART brlzneu 181 246 IPR004827 GO:0003700|GO:0006355
Viun5g03215 487 MobiDBLite consensus disorder prediction 90 113 - -
Viun5g03215 487 Pfam Seed dormancy control 266 340 IPR025422 GO:0006351|GO:0043565
Viun5g03215 487 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 188 203 IPR004827 GO:0003700|GO:0006355
Viun5g03215 487 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 183 227 IPR004827 GO:0003700|GO:0006355
Viun5g03215 487 Gene3D - 184 233 - -
Viun5g03215 487 Coils Coil 204 231 - -
Viun5g03215 487 FunFam BZIP family transcription factor 184 233 - -
Viun5g03215 487 SUPERFAMILY Leucine zipper domain 185 228 IPR046347 GO:0003700|GO:0006355
Viun5g03215 487 PANTHER TRANSCRIPTION FACTOR TGA9 118 459 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03215 Viun-Chr5 42952138 42959282 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g03215 128 487 bZIP Transcription Factor Family AT1G08320 67.769 0.0 509
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Viun5g03215 DOG1 5.2e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03215 K14431 - gmx:100775461 846.269