Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03213 ATGTACCCTCATCACCAACACCAAGGAAAAAACATTCATTCTTCTTCCAGAATGCCAATCCCTTCTGAGAGGCACATGTTCCTTCAAACAGGAAATGGGTCTGGAGATTCTGGACTTGTGCTTTCAACTGATGCTAAACCAAGATTAAAATGGACAGCAGATCTTCATGCCAGATTTATAGAAGCAGTCAATCAGTTAGGAGGAGCTGACAAAGCAACTCCAAAAACAGTAATGAAACTCATGGGAATTCCAGGGCTTACCTTATACCATTTAAAGAGCCATCTTCAGAAGTATAGATTGAGCAAGAATCTGCATGGACAAAGCAACAACGTGACACACAAAATGACAACAAGTGCAACAACTGGGGAGAGACTTTCTGAAACCAGTGGGACTCACATGAACAAATTAAGCCTTGGACCGCAGGCTAACAAAGATCTGCATATAAGCGAGGCACTGCAGATGCAGATTGAGGTGCAGAGAAGACTCAATGAACAACTTGAGGTACAAAGACACTTGCAGCTTAGGATTGAGGCACAAGGAAAATACCTTCAGTCTGTGTTGGAGAAAGCACAAGAGACTCTTGGGAGACAAAATTTGGGAATAGTGGGACTTGAAACTGCAAAAGTTCAACTGTCAGAGCTGGTGTCAAAAGTGTCATCTCAGTGCCTTAACTCAGCATTCTCAGAGCTGAAGGAATTGCAAGGATTTTGCCCTCAGCAAACACACACCAACCAGCCAAACGATTGCTCAGTGGACAGTTGCCTCACATCCTGTGACAGATCACAGAAGGAGCAAGAGATTCAAAATGGCTTCAGACACTTCAGCAGCCATGTGTTCATGGAACAAAGGGAAGCCACAGAAGCTCCCAACAACCTTAGGAACCGTGAACTCAATTGGTGTGATGATGGGAAAAAGAACACCTTCCTTGCCCCATTGAGCAGGAATGAAGAAAGAAGAAACTTTGCCGCTGAAACCGGTCCTGGCAACTTATCCATGTCCATTGGACTTGAAAGAGAAACAGAAAACAGAAGCAGCATGTATCCTGAAAACCTAATCACAGAAAACCAATCAGAAGGTGAGTTCCAGCACCGGAACAGAATCAAGACAGAAACAATGAAACCAGTAGATGAAAAAGTTTCTCAAGATTATAGGATGCCAGCTTCTTACTTTGTAGCAGCAAGATTGGACCTAAACAACCACGGAGACAATGAAGCTGCAACCACTTGTAAACAACTGGACTTGAATAGATTCAGTTGGAGCTGA 1263 0.4347 MYPHHQHQGKNIHSSSRMPIPSERHMFLQTGNGSGDSGLVLSTDAKPRLKWTADLHARFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSKNLHGQSNNVTHKMTTSATTGERLSETSGTHMNKLSLGPQANKDLHISEALQMQIEVQRRLNEQLEVQRHLQLRIEAQGKYLQSVLEKAQETLGRQNLGIVGLETAKVQLSELVSKVSSQCLNSAFSELKELQGFCPQQTHTNQPNDCSVDSCLTSCDRSQKEQEIQNGFRHFSSHVFMEQREATEAPNNLRNRELNWCDDGKKNTFLAPLSRNEERRNFAAETGPGNLSMSIGLERETENRSSMYPENLITENQSEGEFQHRNRIKTETMKPVDEKVSQDYRMPASYFVAARLDLNNHGDNEAATTCKQLDLNRFSWS 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03213 420 Coils Coil 149 169 - -
Viun5g03213 420 Pfam MYB-CC type transfactor, LHEQLE motif 147 193 IPR025756 -
Viun5g03213 420 SUPERFAMILY Homeodomain-like 45 101 IPR009057 -
Viun5g03213 420 Gene3D - 45 103 - -
Viun5g03213 420 FunFam Myb family transcription factor 45 103 - -
Viun5g03213 420 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 8 311 IPR044848 GO:0003700
Viun5g03213 420 NCBIfam myb-like DNA-binding domain, SHAQKYF class 46 101 IPR006447 GO:0003677
Viun5g03213 420 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 43 103 IPR017930 -
Viun5g03213 420 Pfam Myb-like DNA-binding domain 48 99 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03213 Viun-Chr5 42927118 42929445 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g03213 78 419 G2-like Transcription Factor Family AT3G04030 49.711 4.74e-97 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Viun5g03213 Myb_DNA-binding 1.2e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03213 - - pvu:PHAVU_005G123900g 775.778
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g03213 5 42927118 42929445 Viun11g01728 11 33387015 33389553 PCT