Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03193 ATGGCAGATCTCCCACCTGGTTTTCGATTCTACCCGACAGAGGAAGAGCTTGTTGCCTTCTATCTGCACAACCAGCTCGAGGGACAAAGACAAGACACCAGCAGGGTTATTCCAGTCATTGACATCAATGGCGTAGAGCCTTGGAATCTCCCATCACTTGCAGGGGAGCGTTGTCGTGGAGACACGGAGCAATGGTTCTTCTTTTCGCCCAGACAAGAGAGAGAGACGAGAGGAGGTAGACCCAACAGAACCACCGCAAGTGGGTACTGGAAAGCCACCGGTTCTCCTTGCCACGTTTACTCTTCCGACAACAAAGTCATTGGGATGAAGAAAACCATGGTGTTTTACGAAGGGAAGGCTCCATCTGGAAGGAAAACCAAATGGAAGATGCATGAGTACAAAGCCATTCAACACTCTCACCAATCCAACACAACCCCTCCCAAGTTGAGGCACGAATTCAGCTTGTGTCGTGTTTATGTTATATCGGGAAGCTTTAGATCGTTTGATCGACGACCACTGGAGGTTGCAAGAGCTGAGTTACGAGTTGATGGGGATAGAGGTGCTGCTTCAACCAGTGCTCAAGAGAGAGCACCATTGGTGGATGGATCAAGCTCTTCTGATACTTCTCACTCTGGTGATGCTCATATCCATGAAGCTGAAGCTGGAGCAGGGTCAAGTGGAACACATTGGAATACAAGTAATAGAGTTGAGGAACCACTTTGGGAATGGGAACACTTAATTCAGTAG 747 0.4846 MADLPPGFRFYPTEEELVAFYLHNQLEGQRQDTSRVIPVIDINGVEPWNLPSLAGERCRGDTEQWFFFSPRQERETRGGRPNRTTASGYWKATGSPCHVYSSDNKVIGMKKTMVFYEGKAPSGRKTKWKMHEYKAIQHSHQSNTTPPKLRHEFSLCRVYVISGSFRSFDRRPLEVARAELRVDGDRGAASTSAQERAPLVDGSSSSDTSHSGDAHIHEAEAGAGSSGTHWNTSNRVEEPLWEWEHLIQ 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03193 248 MobiDBLite consensus disorder prediction 196 210 - -
Viun5g03193 248 SUPERFAMILY NAC domain 2 159 IPR036093 GO:0003677|GO:0006355
Viun5g03193 248 Pfam No apical meristem (NAM) protein 5 134 IPR003441 GO:0003677|GO:0006355
Viun5g03193 248 ProSiteProfiles NAC domain profile. 4 161 IPR003441 GO:0003677|GO:0006355
Viun5g03193 248 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 3 204 - -
Viun5g03193 248 MobiDBLite consensus disorder prediction 184 213 - -
Viun5g03193 248 Gene3D NAC domain 13 164 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03193 Viun-Chr5 42838225 42839586 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g03193 1 246 NAC Transcription Factor Family AT5G22380 57.661 1.79e-92 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Viun5g03193 NAM 9.5e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03193 - - gmx:100784960 436.032