Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03192 ATGGCAGATCTCCCACCTGGTTTTCGATTCTACCCGACAGAGGAAGAGCTTGTTGCCTTCTATCTGCACAACCAGCTCGAGGGACAAAGACAAGACACCAGCAGGGTTATTCCAGTCATTGACATCAATGGCGTAGAGCCTTGGAATCTCCCATCACTTGCAGGGGAGCGTTGTCGTGGAGACACGGAGCAATGGTTCTTCTTTTCGCCCAGACAAGAGAGAGAGACGAGAGGAGGTAGACCCAACAGAACCACCGCAAGTGGGTACTGGAAAGCCACCGGTTCTCCTTGCCACGTTTACTCTTCCGACAACAAAGTCATTGGGATGAAGAAAACCATGGTGTTTTACGAAGGGAAGGCTCCATCTGGAAGGAAAACCAAATGGAAGATGCATGAGTACAAAGCCATTCAACACTCTCACCAATCCAACACAACCCCTCCCAAGTTTTTGTTTTGGCAGTTGAGGCACGAATTCAGCTTGTGTCGTGTTTATGTTATATCGGGAAGCTTTAGATCGTTTGATCGACGACCACTGGAGGTTGCAAGAGCTGAGTTACGAGTTGATGGGGATAGAGGTGCTGCTTCAACCAGTGCTCAAGAGAGAGCACCATTGGTGGATGGATCAAGCTCTTCTGATACTTCTCACTCTGGTGATGCTCATATCCATGAAGCTGAAGCTGGAGCAGGGTCAAGTGGAACACATTGGAATACAAGTAATAGAGTTGAGGAACCACTTTGGGAATGGGAACACTTAATTCAGTAG 762 0.4816 MADLPPGFRFYPTEEELVAFYLHNQLEGQRQDTSRVIPVIDINGVEPWNLPSLAGERCRGDTEQWFFFSPRQERETRGGRPNRTTASGYWKATGSPCHVYSSDNKVIGMKKTMVFYEGKAPSGRKTKWKMHEYKAIQHSHQSNTTPPKFLFWQLRHEFSLCRVYVISGSFRSFDRRPLEVARAELRVDGDRGAASTSAQERAPLVDGSSSSDTSHSGDAHIHEAEAGAGSSGTHWNTSNRVEEPLWEWEHLIQ 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03192 253 Gene3D NAC domain 13 169 IPR036093 GO:0003677|GO:0006355
Viun5g03192 253 MobiDBLite consensus disorder prediction 189 218 - -
Viun5g03192 253 Pfam No apical meristem (NAM) protein 5 134 IPR003441 GO:0003677|GO:0006355
Viun5g03192 253 SUPERFAMILY NAC domain 2 164 IPR036093 GO:0003677|GO:0006355
Viun5g03192 253 MobiDBLite consensus disorder prediction 201 215 - -
Viun5g03192 253 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 3 209 - -
Viun5g03192 253 ProSiteProfiles NAC domain profile. 4 166 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03192 Viun-Chr5 42838225 42839587 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g03192 1 251 NAC Transcription Factor Family AT5G22380 56.126 5.76e-91 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Viun5g03192 NAM 1e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03192 - - gmx:100784960 429.869