Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03184 ATGGAAGGGGTTTCCAGGGAAGCCCAGATGTCCATCGCTGCTTCTTCCATGTTTCCTGGCTTCAGATTCTGCCCCACCGATGAGGAGTTGATTTCTTACTACCTTAGGAAGAAGTTGGATGGCCATGAAGAGAGTGTTCAAGTCATTTCTGAGGTTGAGCTCTGTAAATACGAGCCTTGGGATTTACCAGCCAAATCGTTCATTCAATCAGATAACGAATGGTTCTTCTTCTCTCCCCGTGGAAGAAAGTACCCAAATGGTTCACAAAGTAAAAGGGCAACTGAATGTGGATATTGGAAGGCCACCGGCAAAGAGCGTAATGTAAAGTCAGGTTCCAACGTTATAGGAACAAAGAGGACATTGGTGTTTCACTTGGGGCGTGCACCTAAAGGGGAGAGGACTGAATGGATTATGCACGAGTACTGCATCAATGACAAGTCTCAGGATTCTTTGGTTATTTGTCGGCTGAAGAGGAACACAGAGTTCCGTTTGAGTGATCATTCGAATAGAGCTTCTTCAAGTCAAAGGCATCCCGTGAATTCACACGAAAGTGGTTGTGCCATTTCAGAAGGTGGTGGTATAGATCAAAGGGATGTTTGTGAGCAGGACAAAGAGGTAGGATGTAGCTCCAAGAGGAGCAGTAGCAGTTACGGTTCTCCTTCCAATGAGCAAATTGATTCTGTCTCAGAATCCAATCCTCGACCAGTTAACGAAGCTACGCTGACAGAATCTTCAGATCAAGCAAAGGAGGTGTATGAAGAGGATTGTTATGCAGAGATACTGAAGGATGATATCATAAAACTAGACGAATCATCAATCTCAGCAGAGGGTCACACAGGAGCAAATGAAGCTGCACAAATGCATCCTGCGCAAGGCACAGCACAACGGAGAATAAGATTAAGGGTTGGGAATTCAAAGCGTTCTTCTCCTGCAGTGGTTGGTTTCCGAAGCACAATAATGCAGTCGTCAAAGAGTAGCTTCTTCGCCGGAATAAGCAACAGTTTGGTGGCGCTTCTTTTCTTGGTTTTCACTCTCATATTTTTGGTGTTTGTTGGGTGGAGTCAGACAAGCGAAATGTTAAGGGGTTGTAAGCGAACCATGTCGAGGCCCATGTTGCTTGTCTTCTTGCTGATTATACTCATAATCACCTCGCAGTTCGAGTGGAAGCAGCAGCTTGTGGCCGATGTTGACTCCAACCCCAACGTGTCTCAGAAGCAGCATCAAATTTCTAAGGCTGAGGAAACCGTCAAGGAGAAGATTATTTTAGTTCAAGAGAAGAATATTCAAAGATTGAATGAGCTAGTGCGGCATCTCCAGGAACAACTGCAACAGTGTAGAGGACGCAATGGAACTATAAATGGCACTGTAAGCCCTCTAGCTGATCGGATTCTGGAGCTTGAGCGACAGCAAATTTTAGAGGATTAA 1425 0.4512 MEGVSREAQMSIAASSMFPGFRFCPTDEELISYYLRKKLDGHEESVQVISEVELCKYEPWDLPAKSFIQSDNEWFFFSPRGRKYPNGSQSKRATECGYWKATGKERNVKSGSNVIGTKRTLVFHLGRAPKGERTEWIMHEYCINDKSQDSLVICRLKRNTEFRLSDHSNRASSSQRHPVNSHESGCAISEGGGIDQRDVCEQDKEVGCSSKRSSSSYGSPSNEQIDSVSESNPRPVNEATLTESSDQAKEVYEEDCYAEILKDDIIKLDESSISAEGHTGANEAAQMHPAQGTAQRRIRLRVGNSKRSSPAVVGFRSTIMQSSKSSFFAGISNSLVALLFLVFTLIFLVFVGWSQTSEMLRGCKRTMSRPMLLVFLLIILIITSQFEWKQQLVADVDSNPNVSQKQHQISKAEETVKEKIILVQEKNIQRLNELVRHLQEQLQQCRGRNGTINGTVSPLADRILELERQQILED 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03184 474 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 16 237 - -
Viun5g03184 474 MobiDBLite consensus disorder prediction 165 194 - -
Viun5g03184 474 Pfam No apical meristem (NAM) protein 19 142 IPR003441 GO:0003677|GO:0006355
Viun5g03184 474 MobiDBLite consensus disorder prediction 166 182 - -
Viun5g03184 474 Gene3D NAC domain 26 176 IPR036093 GO:0003677|GO:0006355
Viun5g03184 474 Coils Coil 421 448 - -
Viun5g03184 474 MobiDBLite consensus disorder prediction 209 246 - -
Viun5g03184 474 ProSiteProfiles NAC domain profile. 17 159 IPR003441 GO:0003677|GO:0006355
Viun5g03184 474 MobiDBLite consensus disorder prediction 208 248 - -
Viun5g03184 474 SUPERFAMILY NAC domain 9 158 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03184 Viun-Chr5 42786452 42793889 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g03184 4 275 NAC Transcription Factor Family AT2G27300 55.147 2.92e-95 289
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Viun5g03184 NAM 8.8e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03184 - - tpra:123896537 680.633