Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03179 ATGTGTTCCAAAAAGAGAAAAAGGTTTATGAGAGCTCTGTTCAAAACAAATGGAGGTTGTGGATGTAGGAACCCTAAATCCTACGAAGTACTCCAACCCTCAATTCACCAAAACACAACAAACCCTACCACTTCCGGCGACAACGACAACAACGTCTTCTCCGAAGTTCACACAAATCATGAAAACCCTAACAACGACAACATGAGAAAACCAAATTCAAAACTCATTGACACTGTTGCGGTTGAGAAGGATTCAAAGGACCCGCACAAGGATTTTCGAGAATCCATGCTTCAAATGATCTTTCAGAGACAAATCTTCACCAAAACCGATCTTCAAGACCTTCTCGAGTGCTTCCTCCGCTTGAACGCCGCCGATAACTACCAAGTTATCGTTCAAGCTTTCATGGAGATTTGTCACGAAACGTTCCCCAAGAAGAATATCAACGATGCAGACGCCAACGCTGCTTCTTTCAATAACAAAATTTGA 486 0.4239 MCSKKRKRFMRALFKTNGGCGCRNPKSYEVLQPSIHQNTTNPTTSGDNDNNVFSEVHTNHENPNNDNMRKPNSKLIDTVAVEKDSKDPHKDFRESMLQMIFQRQIFTKTDLQDLLECFLRLNAADNYQVIVQAFMEICHETFPKKNINDADANAASFNNKI 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03179 161 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 55 141 IPR038933 GO:0045892
Viun5g03179 161 ProSiteProfiles OVATE domain profile. 81 140 IPR006458 -
Viun5g03179 161 MobiDBLite consensus disorder prediction 36 71 - -
Viun5g03179 161 NCBIfam uncharacterized plant-specific domain TIGR01568 79 139 IPR006458 -
Viun5g03179 161 Pfam Transcriptional repressor, ovate 85 140 IPR006458 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03179 Viun-Chr5 42707770 42708255 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Viun5g03179 Ovate 6.5e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03179 - - vun:114184742 320.857
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g03179 5 42707770 42708255 Viun5g03179 5 42707770 42708255 ECH
Viun5g03179 5 42707770 42708255 Viun11g01678 11 33046400 33047737 PCT