Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03175 ATGTTCGCCTTGGTGGTAGGAACTCCCAACTATATGTGTCCTGAACTACTTGCGGATATTCCTTATGGATTCAAATCTGATATTTGGTCACTAGGGTGTTGTATATATGAGATGGCTGCTCATCGCCCAGCTTTTAAAGCTTTTGACATGGCAGGTTTGATAAGCAAGATAAACCGTTCCTCTATTGGCCCTCTGCCTCCCTGCTATTCCCCATCTTTGAAAACACTGATAAAGGGCATGCTGAGGAAAAATCCTGAGCATCGTCCAACAGCATCTGAAGTCTTGAAGCATCCTTATTTATTGCCTTATGTTGATCAATATCGTTCATCTTTCTCTCCAACAGCCAGTTCTCCTGAAAAGCCAATTTCTGCTGTTCATCATCATCGAAAAAATAAGCCAGACGGTCAAAATAGTAGTAGTTCAAGTACAGAGAAAGATAGTTTGATGTCAATTATGAAAAACACTGCAAATGCAGTGCAGAAGTGTGATAGCAAAAGCACTGAACTAGACATGACCTCAATTGAGGATGATGGCTCTGAGCAACTCCTGCCTGATGAAGAAGGAAATGGCTCTATAAAAGTCAACGACAAAACTATTGATCAAGAGGTGACAAAGCAGTTTAATAATGAACACCATTCTAATGTTGTATCTAAGCAACCAATAGCAATTAAGAATGTGGTGACAACATTAAGAAATAGAAAACTTAGAGAGACAAGTTCTCCGATAAGAGGCAATAGCATAAAGGGTGGTGGTGTGTTGACGCATAAATTAAATACAGAGACATTGTCCAAATTGCCCAAACCTAATTTTGGTGCTTGTGATTTGAAGCCGAATTTGGAGGTGCCAACTAATGCATCTTCAAAAGCAACTCCTGCTCCTGCTAAAAGATTGCAAGGATCACATACATCAAAGCATCAGTTACCAATGATTGAATCCACACCAAAAACTAAACCTCGACATACTGTGATTCCACCACTGGGTCCTTCCAAACAAGTAGAAGGTCGTGAATTTGCTGCTAAGCCAAGGGAAAAGACTCCTCCAAGCTTACTTAAACCACCTTCTTTTCCAGTACATGTGAGGCAGACTGGGTTTGATGTTCCCAATGCAGCAAACAATAGTGGAAAGTCAAGTCCAAACAAAATGGTTCGGGAGCCTAAGGTAAGCCATAACCAGTTGACCAACAGTCATCTACCACTTGTTTCTAGAGAGATTACTCGAGAGCCTTTAAAGGCTTTTGAAAGCAGTTCCAAAGGAATGCAAACAGACAGCAGTAATTCTGTCTCATCTTCTTTCTCTATTCAAGGATTCGAACTTTCTGATTTCGCAACCACTTTTATTGACTTAAGTGAAACAACACTTCTTGTTGAGGAGAGTTTAAACCACGCTGAAAATGTGGAATCACGAGGAGATAGCGGTTCACCTGCCTCTTATTCGCATTTTGAGATGTCTGAACAATTGTCTGAAGAAACCCCTGACATTACATCACACGTTCAGAAGATAATGACTAGTGACGAGAAAGTAGGTCCCAGTTTATCTCCAGATCATTCGGTTCAAGATGCTAAGGTAATGTTTGCTTCTGATGATAGTTCTCCCATAAATCAGAGGATCACATCTGCTGGCTCCATGTGTGAAAATACATCTGTAGAATCCTCTGCTGAAATCACAGAAGAAATAGAAGATGTTGAAGATATTTCTAAGGAGATGTCTTCAACCAAATCTCCTCAACAGTCACTCCCCATTTCTGGAGAAAAATTTGCTTGTGAAGAATTTGGTCCAACAAGCAAACCAAATAATAGACATGATAAAGTTAGCCAGCCTAAACTTATGTGCTTCTCCAGTGATGACAAATTTATGGTGAGGGGAAGACTGTCATCAGCGGAAGAAACTTCTCCTTTGATCATCTCTACTAAAATTTCAAGCCAGAAAGTTTTGCAAGAGGAGAAAGGAACAGTTTCGGCATCAGAAAGGCCAGCTGTTGGCCATTTTCCTCCAGCTTTTGATGATGTCATTCATGTCATACGCCATAGCAGTTATCGTGTGGGGAGTGAGCAGCCAGTAAAGGAATCCGTGGAGATGGGAGTTCAAAATGTAGATGTTGGTAAGTTTATCAACATTGTAAGGGATGATATAGAAATGAGAAACGTGAGCACTCCTTTGACCCTAAAATCTTCTAATTGCTCAGAAGCTATTGGTTTGAAGGCAAATATTTCTGAAAATATGGAAATTAGAAACTTGAACAATCCTCCCAACTTAAAATCTTCAAGTTTCACCGACTCGTTGAGCATGAAATCAAGTCTTTCTGACAATCCTGGTGTCAGGGAACAAGATGTGGAAAATCCTGATTCTCTTGTTGCAAAATCTGATTCCCCTAAGTATATCGGATACACTCCTGCAGCTGAAGAAGAACCACCAGCAAAGGAAGTTTTGGATGTTAAATCTTCCAGGCAGAGAGCTGAGGCCCTTGAAGGACTGTTAGAATTATCTGCAGATTTGCTGCAGCAAAATAGATTGGAGGAACTTGCAGTTGTTCTGAAGCCTTTTGGAAAAGATAAAGTTTCCCCAAGGGAGACAGCTATTTGGTTAGCCAAGAGTTTAAAAGGATTGATGCTTGACGAAAGTGGAGGACGCAGTTAA 2634 0.4055 MFALVVGTPNYMCPELLADIPYGFKSDIWSLGCCIYEMAAHRPAFKAFDMAGLISKINRSSIGPLPPCYSPSLKTLIKGMLRKNPEHRPTASEVLKHPYLLPYVDQYRSSFSPTASSPEKPISAVHHHRKNKPDGQNSSSSSTEKDSLMSIMKNTANAVQKCDSKSTELDMTSIEDDGSEQLLPDEEGNGSIKVNDKTIDQEVTKQFNNEHHSNVVSKQPIAIKNVVTTLRNRKLRETSSPIRGNSIKGGGVLTHKLNTETLSKLPKPNFGACDLKPNLEVPTNASSKATPAPAKRLQGSHTSKHQLPMIESTPKTKPRHTVIPPLGPSKQVEGREFAAKPREKTPPSLLKPPSFPVHVRQTGFDVPNAANNSGKSSPNKMVREPKVSHNQLTNSHLPLVSREITREPLKAFESSSKGMQTDSSNSVSSSFSIQGFELSDFATTFIDLSETTLLVEESLNHAENVESRGDSGSPASYSHFEMSEQLSEETPDITSHVQKIMTSDEKVGPSLSPDHSVQDAKVMFASDDSSPINQRITSAGSMCENTSVESSAEITEEIEDVEDISKEMSSTKSPQQSLPISGEKFACEEFGPTSKPNNRHDKVSQPKLMCFSSDDKFMVRGRLSSAEETSPLIISTKISSQKVLQEEKGTVSASERPAVGHFPPAFDDVIHVIRHSSYRVGSEQPVKESVEMGVQNVDVGKFINIVRDDIEMRNVSTPLTLKSSNCSEAIGLKANISENMEIRNLNNPPNLKSSSFTDSLSMKSSLSDNPGVREQDVENPDSLVAKSDSPKYIGYTPAAEEEPPAKEVLDVKSSRQRAEALEGLLELSADLLQQNRLEELAVVLKPFGKDKVSPRETAIWLAKSLKGLMLDESGGRS 877
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03175 877 MobiDBLite consensus disorder prediction 281 310 - -
Viun5g03175 877 Pfam Protein kinase domain 5 100 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g03175 877 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 4 826 - -
Viun5g03175 877 MobiDBLite consensus disorder prediction 745 805 - -
Viun5g03175 877 MobiDBLite consensus disorder prediction 745 772 - -
Viun5g03175 877 Gene3D Transferase(Phosphotransferase) domain 1 2 175 - -
Viun5g03175 877 SMART serkin_6 1 100 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g03175 877 MobiDBLite consensus disorder prediction 281 333 - -
Viun5g03175 877 SUPERFAMILY Protein kinase-like (PK-like) 4 130 IPR011009 -
Viun5g03175 877 ProSiteProfiles Protein kinase domain profile. 1 100 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g03175 877 MobiDBLite consensus disorder prediction 112 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03175 Viun-Chr5 42679094 42685565 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g03175 7 100 MAP Kinase Kinase Kinase AT1G53570 41.667 1.49e-14 75.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Viun5g03175 Pkinase 2.3e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03175 K08857 - gmx:100780141 1318.91