Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03174 ATGGAGTCGAGGATGGATCACTACGAGATCATGGAGCAGATCGGTCGCGGAGCGTTTGGCGCCGCGATTCTGGTGAACCACAAAGCGGAGAAGAAGAAGTACGTGTTGAAGAAAATCAGGCTCGCGCGGCAGACTGAACGATGCAGAAGATCTGCTCATCAGGAGATGGCGCTTATTGCTCGAATTCAGCACCCTTACATTGTGGAATTCAAAGAGGCTTGGGTTGAGAAGGGTTGCTATGTTTGCATTGTTACTGGTTATTGTGAAGGTGGAGACATGGCTGCATTGATGAAAAAGTCAAATGGGATTTACTTTCCTGAGGAGAAACTCTGCAAGTGGTTTACTCAATTACTTTTGGCAGTGGAATACCTGCATTCAAATTTTGTTTTACATCGCGACCTAAAGTGTTCCAATATCTTTCTTACCAAGGATCAAGATGTTCGCCTTGGGGATTTTGGGCTTGCTAAGACACTAAAAGCGGATGATTTGGCTTCTTCGGTGGTAGGAACTCCCAACTATATGTGTCCTGAACTACTTGCGGATATTCCTTATGGATTCAAATCTGATATTTGGTCACTAGGGTGTTGTATATATGAGATGGCTGCTCATCGCCCAGCTTTTAAAGCTTTTGACATGGCAGGTTTGATAAGCAAGATAAACCGTTCCTCTATTGGCCCTCTGCCTCCCTGCTATTCCCCATCTTTGAAAACACTGATAAAGGGCATGCTGAGGAAAAATCCTGAGCATCGTCCAACAGCATCTGAAGTCTTGAAGCATCCTTATTTATTGCCTTATGTTGATCAATATCGTTCATCTTTCTCTCCAACAGCCAGTTCTCCTGAAAAGCCAATTTCTGCTGTTCATCATCATCGAAAAAATAAGCCAGACGGTCAAAATAGTAGTAGTTCAAGTACAGAGAAAGATAGTTTGATGTCAATTATGAAAAACACTGCAAATGCAGTGCAGAAGTGTGATAGCAAAAGCACTGAACTAGACATGACCTCAATTGAGGATGATGGCTCTGAGCAACTCCTGCCTGATGAAGAAGGAAATGGCTCTATAAAAGTCAACGACAAAACTATTGATCAAGAGGTGACAAAGCAGTTTAATAATGAACACCATTCTAATGTTGTATCTAAGCAACCAATAGCAATTAAGAATGTGGTGACAACATTAAGAAATAGAAAACTTAGAGAGACAAGTTCTCCGATAAGAGGCAATAGCATAAAGGGTGGTGGTGTGTTGACGCATAAATTAAATACAGAGACATTGTCCAAATTGCCCAAACCTAATTTTGGTGCTTGTGATTTGAAGCCGAATTTGGAGGTGCCAACTAATGCATCTTCAAAAGCAACTCCTGCTCCTGCTAAAAGATTGCAAGGATCACATACATCAAAGCATCAGTTACCAATGATTGAATCCACACCAAAAACTAAACCTCGACATACTGTGATTCCACCACTGGGTCCTTCCAAACAAGTAGAAGGTCGTGAATTTGCTGCTAAGCCAAGGGAAAAGACTCCTCCAAGCTTACTTAAACCACCTTCTTTTCCAGTACATGTGAGGCAGACTGGGTTTGATGTTCCCAATGCAGCAAACAATAGTGGAAAGTCAAGTCCAAACAAAATGGTTCGGGAGCCTAAGGTAAGCCATAACCAGTTGACCAACAGTCATCTACCACTTGTTTCTAGAGAGATTACTCGAGAGCCTTTAAAGGCTTTTGAAAGCAGTTCCAAAGGAATGCAAACAGACAGCAGTAATTCTGTCTCATCTTCTTTCTCTATTCAAGGATTCGAACTTTCTGATTTCGCAACCACTTTTATTGACTTAAGTGAAACAACACTTCTTGTTGAGGAGAGTTTAAACCACGCTGAAAATGTGGAATCACGAGGAGATAGCGGTTCACCTGCCTCTTATTCGCATTTTGAGATGTCTGAACAATTGTCTGAAGAAACCCCTGACATTACATCACACGTTCAGAAGATAATGACTAGTGACGAGAAAGTAGGTCCCAGTTTATCTCCAGATCATTCGGTTCAAGATGCTAAGGTAATGTTTGCTTCTGATGATAGTTCTCCCATAAATCAGAGGATCACATCTGCTGGCTCCATGTGTGAAAATACATCTGTAGAATCCTCTGCTGAAATCACAGAAGAAATAGAAGATGTTGAAGATATTTCTAAGGAGATGTCTTCAACCAAATCTCCTCAACAGTCACTCCCCATTTCTGGAGAAAAATTTGCTTGTGAAGAATTTGGTCCAACAAGCAAACCAAATAATAGACATGATAAAGTTAGCCAGCCTAAACTTATGTGCTTCTCCAGTGATGACAAATTTATGGTGAGGGGAAGACTGTCATCAGCGGAAGAAACTTCTCCTTTGATCATCTCTACTAAAATTTCAAGCCAGAAAGTTTTGCAAGAGGAGAAAGGAACAGTTTCGGCATCAGAAAGGCCAGCTGTTGGCCATTTTCCTCCAGCTTTTGATGATGTCATTCATGTCATACGCCATAGCAGTTATCGTGTGGGGAGTGAGCAGCCAGTAAAGGAATCCGTGGAGATGGGAGTTCAAAATGTAGATGTTGGTAAGTTTATCAACATTGTAAGGGATGATATAGAAATGAGAAACGTGAGCACTCCTTTGACCCTAAAATCTTCTAATTGCTCAGAAGCTATTGGTTTGAAGGCAAATATTTCTGAAAATATGGAAATTAGAAACTTGAACAATCCTCCCAACTTAAAATCTTCAAGTTTCACCGACTCGTTGAGCATGAAATCAAGTCTTTCTGACAATCCTGGTGTCAGGGAACAAGATGTGGAAAATCCTGATTCTCTTGTTGCAAAATCTGATTCCCCTAAGTATATCGGATACACTCCTGCAGCTGAAGAAGAACCACCAGCAAAGGAAGTTTTGGATGTTAAATCTTCCAGGCAGAGAGCTGAGGCCCTTGAAGGACTGTTAGAATTATCTGCAGATTTGCTGCAGCAAAATAGATTGGAGGAACTTGCAGTTGTTCTGAAGCCTTTTGGAAAAGATAAAGTTTCCCCAAGGGAGACAGCTATTTGGTTAGCCAAGAGTTTAAAAGGATTGATGCTTGACGAAAGTGGAGGACGCAGTTAA 3120 0.4131 MESRMDHYEIMEQIGRGAFGAAILVNHKAEKKKYVLKKIRLARQTERCRRSAHQEMALIARIQHPYIVEFKEAWVEKGCYVCIVTGYCEGGDMAALMKKSNGIYFPEEKLCKWFTQLLLAVEYLHSNFVLHRDLKCSNIFLTKDQDVRLGDFGLAKTLKADDLASSVVGTPNYMCPELLADIPYGFKSDIWSLGCCIYEMAAHRPAFKAFDMAGLISKINRSSIGPLPPCYSPSLKTLIKGMLRKNPEHRPTASEVLKHPYLLPYVDQYRSSFSPTASSPEKPISAVHHHRKNKPDGQNSSSSSTEKDSLMSIMKNTANAVQKCDSKSTELDMTSIEDDGSEQLLPDEEGNGSIKVNDKTIDQEVTKQFNNEHHSNVVSKQPIAIKNVVTTLRNRKLRETSSPIRGNSIKGGGVLTHKLNTETLSKLPKPNFGACDLKPNLEVPTNASSKATPAPAKRLQGSHTSKHQLPMIESTPKTKPRHTVIPPLGPSKQVEGREFAAKPREKTPPSLLKPPSFPVHVRQTGFDVPNAANNSGKSSPNKMVREPKVSHNQLTNSHLPLVSREITREPLKAFESSSKGMQTDSSNSVSSSFSIQGFELSDFATTFIDLSETTLLVEESLNHAENVESRGDSGSPASYSHFEMSEQLSEETPDITSHVQKIMTSDEKVGPSLSPDHSVQDAKVMFASDDSSPINQRITSAGSMCENTSVESSAEITEEIEDVEDISKEMSSTKSPQQSLPISGEKFACEEFGPTSKPNNRHDKVSQPKLMCFSSDDKFMVRGRLSSAEETSPLIISTKISSQKVLQEEKGTVSASERPAVGHFPPAFDDVIHVIRHSSYRVGSEQPVKESVEMGVQNVDVGKFINIVRDDIEMRNVSTPLTLKSSNCSEAIGLKANISENMEIRNLNNPPNLKSSSFTDSLSMKSSLSDNPGVREQDVENPDSLVAKSDSPKYIGYTPAAEEEPPAKEVLDVKSSRQRAEALEGLLELSADLLQQNRLEELAVVLKPFGKDKVSPRETAIWLAKSLKGLMLDESGGRS 1039
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03174 1039 ProSiteProfiles Protein kinase domain profile. 8 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g03174 1039 Gene3D Phosphorylase Kinase; domain 1 1 87 - -
Viun5g03174 1039 MobiDBLite consensus disorder prediction 443 472 - -
Viun5g03174 1039 MobiDBLite consensus disorder prediction 908 967 - -
Viun5g03174 1039 Pfam Protein kinase domain 8 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g03174 1039 SUPERFAMILY Protein kinase-like (PK-like) 4 291 IPR011009 -
Viun5g03174 1039 ProSitePatterns Protein kinases ATP-binding region signature. 14 37 IPR017441 GO:0005524
Viun5g03174 1039 MobiDBLite consensus disorder prediction 443 495 - -
Viun5g03174 1039 MobiDBLite consensus disorder prediction 908 934 - -
Viun5g03174 1039 SMART serkin_6 8 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g03174 1039 CDD STKc_Nek 7 262 - -
Viun5g03174 1039 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 5 988 - -
Viun5g03174 1039 MobiDBLite consensus disorder prediction 274 309 - -
Viun5g03174 1039 FunFam Serine/threonine-protein kinase Nek2 5 87 - -
Viun5g03174 1039 ProSitePatterns Serine/Threonine protein kinases active-site signature. 129 141 IPR008271 GO:0004672|GO:0006468
Viun5g03174 1039 Gene3D Transferase(Phosphotransferase) domain 1 90 337 - -
Viun5g03174 1039 FunFam Serine/threonine-protein kinase Nek5 90 334 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03174 Viun-Chr5 42677855 42685565 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g03174 14 262 MAP Kinase Kinase Kinase AT1G53570 31.890 9.15e-36 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Viun5g03174 Pkinase 1.8e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03174 K08857 - gmx:100780141 1648.64