Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03162 ATGTTTGGAATGGGAGATTTGCCTTATCAGAATGGGGGAGGACACTGGTTTTCTTCAGGTTCTCAATCATCTCAACTCGGGATTCAAGAGGAGGACCGAGTCAATTCTTTGATTAACAAAATGACAGTAAACAATTCAGTTATCATTGCAGGAGAAGGTATGGTTGGACGGGCTGCATTTACAGGCAGCCATCAGTGGATTCTCTTGAACAGTTTCACAAAAGATGTATATCCACAGCAGTTATACCCTGAAGTGCATCACCAACTTTCAGCTGGAATACAGACAGTAGTAGTTATTCCTGTACTTCCTCACGGTGTTTGTCAATTTGGTTCTTTCTTACCTATGAATGAGAATATGGGATTTGTGAATGATGTGAAGAGCTTGATCTTGCAATTAGGATGTGTTCCTGGCGCCCTTCTATCTGAAGACTATTCAGCAAATCGATTTGCTGGACCTTCCATTGTGCCGGTGTCTATTGATCCACCTGTCATTACGTCGAATTGCACTCCCTCAGTAGCTAATGGCTCCAATCAGAAAAGTAATTCATTTCATACTTCAAGGCCTTTTGTTCAAACACCTTGCCATTTAAATGTAGAGACAAGTACCTGCCAGGGTTCTGCACTGGCACCAGAAACCTGTAAAATGAACCAGATACCCAGCAACCATTGCCAACCAAATGTTATTCCAATGAGTAAAACAAACTTTTCTGGGCAACAACAGAACAGAGCTATGGAGGCTGAAGTGATAATCTCAGATGTTGATTCATGCCTGCAGCAGCATTCTGTTTCACATACTGCTAGATCTGCATTTGATAACTTGACTGGTTCTGGGTCTTTTGGTCAATCTTGTTTGAGTGATGATCATCTAACATTAATGGAGCAACAAATCATATCAGCGATTGGGAATCGAGATAATGTTAATCCTTGTTTCAATGTGTCAAGCACCTTAAACATGCCACATCTAAACACAGATGGAGGCCACATACTTGGCCACAGTATGAATTCTAGCAGTGCCCCTTTACTTGGAGGAATCCCAATACATGGTGGAATGAGTACTCTTTTGAGGTCAAATCTGATTACTAGTCCTGGTTCAAAATCTCCCAAAGCATCCACAGCTGATTTATCCAGAGAAGTTGAGATTGGTCTTCAAAATTCTGATTCTTCAACTAAAGCAAGAGGTTGTTCTTTGGCTAATTCGAGTAATCAATGCAGCACCTTTCCCATGCACGTAGAAGGTTCTGATCACAAGTGTGTTTCAACTAATCAAAAGATAGATTATGATTTGCATCAGGCCCCTAACCTCCCCACTTTCCATGTTGAGCAACGTGTGCCCATTAGTGGTCAAATCCCTGGTCTTGCCCATGATTGCGTTAGTAAAGATGATAGTATTCAATCTATGATGGGAATGAATCCCAAACTCAAACTAGATTGTACTAAACCTCCATCAGATGATGACCTGTTTGATGTTTTAGGGGTAGATTTGAAAAACAAATTGCTGAATGGAAATTGGAATAAACTCTTTGCAGACGAATTGGATGCAAATACAGAAAATATGGACAAAAAGTCAGAACCTATGAACATACCAGACAGTGGCATATTTTCTGGGACGGGAACAGACCACCTCTTGGATGCAGTGGTCTCCAAAGCCAAATCTGTCGTAAAACAAGATTCTGACGACATGTCTTGCAGGACAACATTGACAAGGAACAGTACTTCCTCTGTTCCCTCTCCTTCCTGTAGACCGGTTATGTCTGGTAATTTCCAAGGGGGTTTATTTGATTTCCCTAAGAATGGTGGTAAAACAGGTGCCACAGAAGCTACCTTTCTTAGGTCCAGATGTAACAAGGAAGATGCCGGAAACTGTTCTCAAACTAGTTCTACTTATGGCTCACAACTTAGTTCATGGGTTGAGAACAGTGGGAGTGTTAAACGTGAGAATAGTGTTTCTACTGGATACTCAAAGCGGCCAGATGAAGCTTGCAAACCCAATCGTAAGAGGCTTAAACCAGGAGAGAATCCCAGACCTCGCCCCAAAGATCGCCAAATGATTCAAGATCGGGTGAAAGAACTAAGAGAAATTGTGCCAAACGGAGCAAAATGTAGCATTGATGCACTTTTGGAACGGACCATCAAGCACATGCTTTTCTTGCAAAGTGTGACAAAGCATGCCGACAAGCTAAAACAAACCGGCGAGTCTAAGATTATTAATAAGGAAGGTGGGTTGCTTTTGAAAGACAACTTTGAGGGAGGAGCTACATGGGCATATGAAGTTGGCTCACAATCCATGGTTTGTCCTATTGTTGTTGAGGATCTGAACCCTCCTCGCCAAATGCTAGTGGAGATGCTTTGTGAGGAAAGAGGTTTCTTTTTGGAAATAGCCGACTTAATCAGAGGATTAGGTTTAACAATATTGAAAGGGGTAATGGAAGCTCACAATGACAAAATCTGGGCACGCTTTGCTGTTGAGGCCAACAGGGATGTAACAAGGATGGAAATATTCATGTCACTGGTTCGTCTTTTGGAGCAAACGGTGAAGGGAAAAGAATCTTCATCCAATGCAATGGATAATAACATGGTGTATCACAGTTTTCCACAGGCTGCGCAGATAGCAGCAACTGGAGGGCCTAGTAGCTTGCAATGA 2640 0.4208 MFGMGDLPYQNGGGHWFSSGSQSSQLGIQEEDRVNSLINKMTVNNSVIIAGEGMVGRAAFTGSHQWILLNSFTKDVYPQQLYPEVHHQLSAGIQTVVVIPVLPHGVCQFGSFLPMNENMGFVNDVKSLILQLGCVPGALLSEDYSANRFAGPSIVPVSIDPPVITSNCTPSVANGSNQKSNSFHTSRPFVQTPCHLNVETSTCQGSALAPETCKMNQIPSNHCQPNVIPMSKTNFSGQQQNRAMEAEVIISDVDSCLQQHSVSHTARSAFDNLTGSGSFGQSCLSDDHLTLMEQQIISAIGNRDNVNPCFNVSSTLNMPHLNTDGGHILGHSMNSSSAPLLGGIPIHGGMSTLLRSNLITSPGSKSPKASTADLSREVEIGLQNSDSSTKARGCSLANSSNQCSTFPMHVEGSDHKCVSTNQKIDYDLHQAPNLPTFHVEQRVPISGQIPGLAHDCVSKDDSIQSMMGMNPKLKLDCTKPPSDDDLFDVLGVDLKNKLLNGNWNKLFADELDANTENMDKKSEPMNIPDSGIFSGTGTDHLLDAVVSKAKSVVKQDSDDMSCRTTLTRNSTSSVPSPSCRPVMSGNFQGGLFDFPKNGGKTGATEATFLRSRCNKEDAGNCSQTSSTYGSQLSSWVENSGSVKRENSVSTGYSKRPDEACKPNRKRLKPGENPRPRPKDRQMIQDRVKELREIVPNGAKCSIDALLERTIKHMLFLQSVTKHADKLKQTGESKIINKEGGLLLKDNFEGGATWAYEVGSQSMVCPIVVEDLNPPRQMLVEMLCEERGFFLEIADLIRGLGLTILKGVMEAHNDKIWARFAVEANRDVTRMEIFMSLVRLLEQTVKGKESSSNAMDNNMVYHSFPQAAQIAATGGPSSLQ 879
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03162 879 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 667 716 IPR011598 GO:0046983
Viun5g03162 879 MobiDBLite consensus disorder prediction 616 653 - -
Viun5g03162 879 CDD bHLH_AtLHW_like 671 740 - -
Viun5g03162 879 MobiDBLite consensus disorder prediction 616 682 - -
Viun5g03162 879 PANTHER TRANSCRIPTION FACTOR BHLH155-LIKE ISOFORM X1-RELATED 25 873 IPR043561 GO:0003700|GO:0006355
Viun5g03162 879 MobiDBLite consensus disorder prediction 657 682 - -
Viun5g03162 879 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 31 128 IPR025610 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03162 Viun-Chr5 42589263 42593562 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g03162 484 855 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G27230 57.407 2.53e-121 380
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03162 - - gmx:100787748 1327.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g03162 5 42589263 42593562 Viun5g03162 5 42589263 42593562 ECH
Viun5g03162 5 42589263 42593562 Viun11g01662 11 32906075 32912478 PCT